Hb_000041_010

Information

Type -
Description -
Location Contig41: 18681-29324
Sequence    

Annotation

kegg
ID pop:POPTR_0004s15940g
description POPTRDRAFT_195347; pfkB-type carbohydrate kinase family protein
nr
ID XP_002306090.2
description pfkB-type carbohydrate kinase family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H0N6
description PfkB-type carbohydrate kinase family protein OS=Populus trichocarpa GN=POPTR_0004s15940g PE=4 SV=2
Gene Ontology
ID GO:0016773
description pentatricopeptide repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_010 0.0 - - pfkB-type carbohydrate kinase family protein [Populus trichocarpa]
2 Hb_000197_220 0.1376282091 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
3 Hb_004785_080 0.1405123483 - - hypothetical protein POPTR_0005s21250g [Populus trichocarpa]
4 Hb_000204_070 0.1546813444 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
5 Hb_001098_050 0.1697928077 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
6 Hb_052764_110 0.17049565 - - PREDICTED: quinone oxidoreductase PIG3 isoform X1 [Jatropha curcas]
7 Hb_027337_020 0.1713130516 - - sodium/hydrogen exchanger plant, putative [Ricinus communis]
8 Hb_001168_050 0.1815827677 - - hypothetical protein POPTR_0007s03190g [Populus trichocarpa]
9 Hb_179924_010 0.1818910266 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
10 Hb_000914_100 0.1827185514 - - unknown [Glycine max]
11 Hb_000808_170 0.1853272448 - - protein disulfide isomerase, putative [Ricinus communis]
12 Hb_114151_020 0.18805186 - - glucan water dikinase 2 [Manihot esculenta]
13 Hb_002131_030 0.189978612 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
14 Hb_000022_150 0.1936609322 - - -
15 Hb_002639_110 0.194417385 - - hypothetical protein L484_011673 [Morus notabilis]
16 Hb_000896_050 0.1965695801 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
17 Hb_011485_060 0.1965717908 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
18 Hb_003683_010 0.1967661787 - - longevity assurance factor, putative [Ricinus communis]
19 Hb_001277_030 0.1970811919 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Nelumbo nucifera]
20 Hb_000286_200 0.1974657274 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000041_010 Hb_000041_010 Hb_000197_220 Hb_000197_220 Hb_000041_010--Hb_000197_220 Hb_004785_080 Hb_004785_080 Hb_000041_010--Hb_004785_080 Hb_000204_070 Hb_000204_070 Hb_000041_010--Hb_000204_070 Hb_001098_050 Hb_001098_050 Hb_000041_010--Hb_001098_050 Hb_052764_110 Hb_052764_110 Hb_000041_010--Hb_052764_110 Hb_027337_020 Hb_027337_020 Hb_000041_010--Hb_027337_020 Hb_000914_100 Hb_000914_100 Hb_000197_220--Hb_000914_100 Hb_000197_220--Hb_004785_080 Hb_000896_050 Hb_000896_050 Hb_000197_220--Hb_000896_050 Hb_003106_190 Hb_003106_190 Hb_000197_220--Hb_003106_190 Hb_000197_220--Hb_001098_050 Hb_000010_290 Hb_000010_290 Hb_000197_220--Hb_000010_290 Hb_004785_080--Hb_000204_070 Hb_158560_010 Hb_158560_010 Hb_004785_080--Hb_158560_010 Hb_004785_080--Hb_052764_110 Hb_001999_210 Hb_001999_210 Hb_004785_080--Hb_001999_210 Hb_000789_200 Hb_000789_200 Hb_004785_080--Hb_000789_200 Hb_004218_180 Hb_004218_180 Hb_000204_070--Hb_004218_180 Hb_004306_120 Hb_004306_120 Hb_000204_070--Hb_004306_120 Hb_002908_040 Hb_002908_040 Hb_000204_070--Hb_002908_040 Hb_003849_280 Hb_003849_280 Hb_000204_070--Hb_003849_280 Hb_001478_010 Hb_001478_010 Hb_000204_070--Hb_001478_010 Hb_001098_050--Hb_002908_040 Hb_004724_410 Hb_004724_410 Hb_001098_050--Hb_004724_410 Hb_001223_010 Hb_001223_010 Hb_001098_050--Hb_001223_010 Hb_000215_160 Hb_000215_160 Hb_001098_050--Hb_000215_160 Hb_000950_060 Hb_000950_060 Hb_001098_050--Hb_000950_060 Hb_001452_210 Hb_001452_210 Hb_052764_110--Hb_001452_210 Hb_007023_030 Hb_007023_030 Hb_052764_110--Hb_007023_030 Hb_002338_050 Hb_002338_050 Hb_052764_110--Hb_002338_050 Hb_000053_060 Hb_000053_060 Hb_052764_110--Hb_000053_060 Hb_098315_080 Hb_098315_080 Hb_052764_110--Hb_098315_080 Hb_011485_060 Hb_011485_060 Hb_027337_020--Hb_011485_060 Hb_000189_320 Hb_000189_320 Hb_027337_020--Hb_000189_320 Hb_005257_010 Hb_005257_010 Hb_027337_020--Hb_005257_010 Hb_114151_020 Hb_114151_020 Hb_027337_020--Hb_114151_020 Hb_003683_010 Hb_003683_010 Hb_027337_020--Hb_003683_010 Hb_002213_020 Hb_002213_020 Hb_027337_020--Hb_002213_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.453002 0.818206 0.587852 0.516685 0.366318 0.609716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05665 0.876793 0.0863125 2.34257 2.37352

CAGE analysis