Hb_180486_010

Information

Type transcription factor
Description TF Family: WRKY
Location Contig180486: 2328-3304
Sequence    

Annotation

kegg
ID rcu:RCOM_0484320
description WRKY transcription factor, putative
nr
ID XP_002531273.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID O04336
description Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1
trembl
ID B9SZ54
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0484320 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180486_010 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_003023_060 0.2239755167 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
3 Hb_003142_100 0.2324617676 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Eucalyptus grandis]
4 Hb_011416_020 0.2340967953 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001268_060 0.2398965001 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002835_260 0.2411128416 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
7 Hb_047833_010 0.254880793 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
8 Hb_136886_010 0.2706884777 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_009683_050 0.2732403717 - - wall-associated kinase, putative [Ricinus communis]
10 Hb_002097_150 0.273987194 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
11 Hb_003910_020 0.2789500727 - - PREDICTED: reticulon-like protein B13 [Jatropha curcas]
12 Hb_006538_030 0.2791190147 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
13 Hb_003053_060 0.2817948534 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
14 Hb_001787_070 0.2829717606 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
15 Hb_011120_020 0.2840451196 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
16 Hb_031530_010 0.2846761121 - - DWNN domain isoform 2 [Theobroma cacao]
17 Hb_001956_190 0.2907892639 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
18 Hb_082225_010 0.291243529 - - DWNN domain isoform 2 [Theobroma cacao]
19 Hb_000523_120 0.2937594246 - - PREDICTED: butyrate--CoA ligase AAE11, peroxisomal-like [Jatropha curcas]
20 Hb_000275_070 0.2940137146 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]

Gene co-expression network

sample Hb_180486_010 Hb_180486_010 Hb_003023_060 Hb_003023_060 Hb_180486_010--Hb_003023_060 Hb_003142_100 Hb_003142_100 Hb_180486_010--Hb_003142_100 Hb_011416_020 Hb_011416_020 Hb_180486_010--Hb_011416_020 Hb_001268_060 Hb_001268_060 Hb_180486_010--Hb_001268_060 Hb_002835_260 Hb_002835_260 Hb_180486_010--Hb_002835_260 Hb_047833_010 Hb_047833_010 Hb_180486_010--Hb_047833_010 Hb_001404_010 Hb_001404_010 Hb_003023_060--Hb_001404_010 Hb_031530_010 Hb_031530_010 Hb_003023_060--Hb_031530_010 Hb_000134_010 Hb_000134_010 Hb_003023_060--Hb_000134_010 Hb_002097_150 Hb_002097_150 Hb_003023_060--Hb_002097_150 Hb_025477_030 Hb_025477_030 Hb_003023_060--Hb_025477_030 Hb_003023_060--Hb_047833_010 Hb_127819_010 Hb_127819_010 Hb_003142_100--Hb_127819_010 Hb_003053_060 Hb_003053_060 Hb_003142_100--Hb_003053_060 Hb_136886_010 Hb_136886_010 Hb_003142_100--Hb_136886_010 Hb_011120_020 Hb_011120_020 Hb_003142_100--Hb_011120_020 Hb_003142_100--Hb_011416_020 Hb_015978_030 Hb_015978_030 Hb_003142_100--Hb_015978_030 Hb_011416_020--Hb_002835_260 Hb_000142_010 Hb_000142_010 Hb_011416_020--Hb_000142_010 Hb_011416_020--Hb_011120_020 Hb_000003_430 Hb_000003_430 Hb_011416_020--Hb_000003_430 Hb_001956_190 Hb_001956_190 Hb_011416_020--Hb_001956_190 Hb_000506_130 Hb_000506_130 Hb_011416_020--Hb_000506_130 Hb_000836_160 Hb_000836_160 Hb_001268_060--Hb_000836_160 Hb_082225_010 Hb_082225_010 Hb_001268_060--Hb_082225_010 Hb_006043_020 Hb_006043_020 Hb_001268_060--Hb_006043_020 Hb_078171_010 Hb_078171_010 Hb_001268_060--Hb_078171_010 Hb_000086_610 Hb_000086_610 Hb_001268_060--Hb_000086_610 Hb_001268_060--Hb_031530_010 Hb_000015_180 Hb_000015_180 Hb_002835_260--Hb_000015_180 Hb_002835_260--Hb_011120_020 Hb_000220_090 Hb_000220_090 Hb_002835_260--Hb_000220_090 Hb_000434_050 Hb_000434_050 Hb_002835_260--Hb_000434_050 Hb_002835_260--Hb_136886_010 Hb_047833_010--Hb_002097_150 Hb_047833_010--Hb_000142_010 Hb_000563_460 Hb_000563_460 Hb_047833_010--Hb_000563_460 Hb_002311_490 Hb_002311_490 Hb_047833_010--Hb_002311_490 Hb_047833_010--Hb_003053_060 Hb_011671_290 Hb_011671_290 Hb_047833_010--Hb_011671_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.725102 0.0713404 0.177579 0 0.0660049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.102243 0.0803528 0 0 0

CAGE analysis