Hb_123964_010

Information

Type -
Description -
Location Contig123964: 1283-1761
Sequence    

Annotation

kegg
ID cit:102627959
description hypothetical protein
nr
ID XP_012078008.1
description PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KD78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13014 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123964_010 0.0 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
2 Hb_008790_020 0.1769681892 - - PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
3 Hb_001085_040 0.1845402534 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
4 Hb_001019_050 0.1957024331 - - PREDICTED: importin-13 [Jatropha curcas]
5 Hb_011861_120 0.1986213932 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
6 Hb_005489_140 0.2017987524 - - PREDICTED: maspardin [Jatropha curcas]
7 Hb_001159_150 0.2091389648 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000012_410 0.2094888623 - - PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
9 Hb_000094_370 0.214305166 - - -
10 Hb_084481_010 0.2171459949 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
11 Hb_007943_200 0.219403423 - - Uncharacterized protein isoform 2 [Theobroma cacao]
12 Hb_143629_130 0.2202384191 - - unnamed protein product [Coffea canephora]
13 Hb_049436_010 0.2223960709 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
14 Hb_025336_020 0.2237136386 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
15 Hb_179924_010 0.2245994662 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
16 Hb_033501_010 0.2248971066 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
17 Hb_010174_150 0.2258728014 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_119530_010 0.2272329477 - - -
19 Hb_000088_270 0.2287913157 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
20 Hb_177994_010 0.230614215 - - PREDICTED: cullin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_123964_010 Hb_123964_010 Hb_008790_020 Hb_008790_020 Hb_123964_010--Hb_008790_020 Hb_001085_040 Hb_001085_040 Hb_123964_010--Hb_001085_040 Hb_001019_050 Hb_001019_050 Hb_123964_010--Hb_001019_050 Hb_011861_120 Hb_011861_120 Hb_123964_010--Hb_011861_120 Hb_005489_140 Hb_005489_140 Hb_123964_010--Hb_005489_140 Hb_001159_150 Hb_001159_150 Hb_123964_010--Hb_001159_150 Hb_008790_020--Hb_005489_140 Hb_001726_110 Hb_001726_110 Hb_008790_020--Hb_001726_110 Hb_162150_010 Hb_162150_010 Hb_008790_020--Hb_162150_010 Hb_008790_020--Hb_001019_050 Hb_025336_020 Hb_025336_020 Hb_008790_020--Hb_025336_020 Hb_049436_010 Hb_049436_010 Hb_008790_020--Hb_049436_010 Hb_000270_030 Hb_000270_030 Hb_001085_040--Hb_000270_030 Hb_010021_030 Hb_010021_030 Hb_001085_040--Hb_010021_030 Hb_002414_060 Hb_002414_060 Hb_001085_040--Hb_002414_060 Hb_011249_070 Hb_011249_070 Hb_001085_040--Hb_011249_070 Hb_001085_040--Hb_001019_050 Hb_143629_130 Hb_143629_130 Hb_001085_040--Hb_143629_130 Hb_000088_270 Hb_000088_270 Hb_001019_050--Hb_000088_270 Hb_001019_050--Hb_025336_020 Hb_000347_450 Hb_000347_450 Hb_001019_050--Hb_000347_450 Hb_000159_120 Hb_000159_120 Hb_001019_050--Hb_000159_120 Hb_107298_010 Hb_107298_010 Hb_001019_050--Hb_107298_010 Hb_001019_050--Hb_005489_140 Hb_011861_120--Hb_008790_020 Hb_002236_050 Hb_002236_050 Hb_011861_120--Hb_002236_050 Hb_011861_120--Hb_025336_020 Hb_011861_120--Hb_001726_110 Hb_011861_120--Hb_049436_010 Hb_000094_370 Hb_000094_370 Hb_011861_120--Hb_000094_370 Hb_005489_140--Hb_107298_010 Hb_005489_140--Hb_025336_020 Hb_089140_040 Hb_089140_040 Hb_005489_140--Hb_089140_040 Hb_083799_010 Hb_083799_010 Hb_005489_140--Hb_083799_010 Hb_116420_010 Hb_116420_010 Hb_001159_150--Hb_116420_010 Hb_003747_060 Hb_003747_060 Hb_001159_150--Hb_003747_060 Hb_007943_200 Hb_007943_200 Hb_001159_150--Hb_007943_200 Hb_002477_050 Hb_002477_050 Hb_001159_150--Hb_002477_050 Hb_000365_050 Hb_000365_050 Hb_001159_150--Hb_000365_050 Hb_011794_080 Hb_011794_080 Hb_001159_150--Hb_011794_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.570075 1.91045 0.528683 2.27509 0.318684 1.98592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02048 2.20532 0 3.5431 1.34529

CAGE analysis