Hb_116102_010

Information

Type -
Description -
Location Contig116102: 104-763
Sequence    

Annotation

kegg
ID pop:POPTR_0204s00240g
description hypothetical protein
nr
ID XP_006388377.1
description hypothetical protein POPTR_0204s00240g [Populus trichocarpa]
swissprot
ID C0LGE4
description Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=2 SV=1
trembl
ID U7E200
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0204s00240g PE=4 SV=1
Gene Ontology
ID GO:0003824
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116102_010 0.0 - - hypothetical protein POPTR_0204s00240g [Populus trichocarpa]
2 Hb_004871_030 0.1419159139 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003861_150 0.1599754626 - - hypothetical protein JCGZ_15167 [Jatropha curcas]
4 Hb_010407_090 0.1647016974 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
5 Hb_166230_010 0.1675099821 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
6 Hb_000174_080 0.1690623808 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
7 Hb_005977_040 0.1713469101 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
8 Hb_000676_320 0.1782253727 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
9 Hb_002870_070 0.1802743828 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_003602_100 0.1803755967 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
11 Hb_002249_090 0.1811968664 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
12 Hb_004162_250 0.1818813273 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
13 Hb_002609_140 0.1832861422 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_005348_120 0.1841616453 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
15 Hb_001488_320 0.1857382113 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
16 Hb_015978_080 0.1859146314 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000062_480 0.1863524304 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
18 Hb_002071_030 0.1863602109 - - PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
19 Hb_000035_340 0.1873119999 - - conserved hypothetical protein [Ricinus communis]
20 Hb_134949_010 0.1879214341 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]

Gene co-expression network

sample Hb_116102_010 Hb_116102_010 Hb_004871_030 Hb_004871_030 Hb_116102_010--Hb_004871_030 Hb_003861_150 Hb_003861_150 Hb_116102_010--Hb_003861_150 Hb_010407_090 Hb_010407_090 Hb_116102_010--Hb_010407_090 Hb_166230_010 Hb_166230_010 Hb_116102_010--Hb_166230_010 Hb_000174_080 Hb_000174_080 Hb_116102_010--Hb_000174_080 Hb_005977_040 Hb_005977_040 Hb_116102_010--Hb_005977_040 Hb_002870_070 Hb_002870_070 Hb_004871_030--Hb_002870_070 Hb_003847_070 Hb_003847_070 Hb_004871_030--Hb_003847_070 Hb_001856_240 Hb_001856_240 Hb_004871_030--Hb_001856_240 Hb_000008_160 Hb_000008_160 Hb_004871_030--Hb_000008_160 Hb_000185_010 Hb_000185_010 Hb_004871_030--Hb_000185_010 Hb_003171_040 Hb_003171_040 Hb_004871_030--Hb_003171_040 Hb_007595_050 Hb_007595_050 Hb_003861_150--Hb_007595_050 Hb_005399_040 Hb_005399_040 Hb_003861_150--Hb_005399_040 Hb_001584_210 Hb_001584_210 Hb_003861_150--Hb_001584_210 Hb_000161_010 Hb_000161_010 Hb_003861_150--Hb_000161_010 Hb_005228_060 Hb_005228_060 Hb_003861_150--Hb_005228_060 Hb_002835_090 Hb_002835_090 Hb_003861_150--Hb_002835_090 Hb_107647_010 Hb_107647_010 Hb_010407_090--Hb_107647_010 Hb_002249_090 Hb_002249_090 Hb_010407_090--Hb_002249_090 Hb_002609_140 Hb_002609_140 Hb_010407_090--Hb_002609_140 Hb_002006_050 Hb_002006_050 Hb_010407_090--Hb_002006_050 Hb_010407_090--Hb_000174_080 Hb_000261_470 Hb_000261_470 Hb_010407_090--Hb_000261_470 Hb_002243_020 Hb_002243_020 Hb_166230_010--Hb_002243_020 Hb_002093_020 Hb_002093_020 Hb_166230_010--Hb_002093_020 Hb_001751_050 Hb_001751_050 Hb_166230_010--Hb_001751_050 Hb_117807_020 Hb_117807_020 Hb_166230_010--Hb_117807_020 Hb_166230_010--Hb_010407_090 Hb_000002_140 Hb_000002_140 Hb_166230_010--Hb_000002_140 Hb_000174_080--Hb_002249_090 Hb_137216_010 Hb_137216_010 Hb_000174_080--Hb_137216_010 Hb_002071_030 Hb_002071_030 Hb_000174_080--Hb_002071_030 Hb_003602_100 Hb_003602_100 Hb_000174_080--Hb_003602_100 Hb_007803_040 Hb_007803_040 Hb_000174_080--Hb_007803_040 Hb_000009_510 Hb_000009_510 Hb_000174_080--Hb_000009_510 Hb_005977_040--Hb_002609_140 Hb_074548_010 Hb_074548_010 Hb_005977_040--Hb_074548_010 Hb_000544_070 Hb_000544_070 Hb_005977_040--Hb_000544_070 Hb_005977_040--Hb_000161_010 Hb_005523_040 Hb_005523_040 Hb_005977_040--Hb_005523_040 Hb_001257_110 Hb_001257_110 Hb_005977_040--Hb_001257_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0480165 0.0320733 1.13008 0.217207 0 0.0675002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.122417 0.0845636 1.89847

CAGE analysis