Hb_116027_010

Information

Type -
Description -
Location Contig116027: 356-1150
Sequence    

Annotation

kegg
ID rcu:RCOM_1374500
description separase, putative (EC:3.4.22.49)
nr
ID XP_012065660.1
description PREDICTED: separase [Jatropha curcas]
swissprot
ID Q5IBC5
description Separase OS=Arabidopsis thaliana GN=ESP1 PE=2 SV=1
trembl
ID B9SSN4
description Separase, putative OS=Ricinus communis GN=RCOM_1374500 PE=4 SV=1
Gene Ontology
ID GO:0005634
description separase-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116027_010 0.0 - - PREDICTED: separase [Jatropha curcas]
2 Hb_000941_130 0.1292673051 - - gamma-tubulin complex component, putative [Ricinus communis]
3 Hb_000820_120 0.1356803639 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
4 Hb_002636_180 0.139222527 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
5 Hb_000071_030 0.142670852 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
6 Hb_000627_180 0.143491389 - - conserved hypothetical protein [Ricinus communis]
7 Hb_061411_010 0.1436817391 - - PREDICTED: ATPase WRNIP1 [Jatropha curcas]
8 Hb_001645_140 0.1452909511 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
9 Hb_000836_270 0.1464437102 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
10 Hb_004109_030 0.1467343732 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000077_070 0.1487407547 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
12 Hb_008147_040 0.1487872234 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
13 Hb_000034_160 0.1509021601 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
14 Hb_001301_170 0.1511095871 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
15 Hb_000418_140 0.1524974493 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
16 Hb_001301_320 0.1543774953 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
17 Hb_000664_070 0.1543942222 - - PREDICTED: protein cereblon [Jatropha curcas]
18 Hb_001318_020 0.1544803143 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
19 Hb_000304_050 0.1549662794 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
20 Hb_000215_190 0.1549785066 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_116027_010 Hb_116027_010 Hb_000941_130 Hb_000941_130 Hb_116027_010--Hb_000941_130 Hb_000820_120 Hb_000820_120 Hb_116027_010--Hb_000820_120 Hb_002636_180 Hb_002636_180 Hb_116027_010--Hb_002636_180 Hb_000071_030 Hb_000071_030 Hb_116027_010--Hb_000071_030 Hb_000627_180 Hb_000627_180 Hb_116027_010--Hb_000627_180 Hb_061411_010 Hb_061411_010 Hb_116027_010--Hb_061411_010 Hb_002890_090 Hb_002890_090 Hb_000941_130--Hb_002890_090 Hb_004109_030 Hb_004109_030 Hb_000941_130--Hb_004109_030 Hb_002111_070 Hb_002111_070 Hb_000941_130--Hb_002111_070 Hb_009615_170 Hb_009615_170 Hb_000941_130--Hb_009615_170 Hb_157966_010 Hb_157966_010 Hb_000941_130--Hb_157966_010 Hb_003729_030 Hb_003729_030 Hb_000941_130--Hb_003729_030 Hb_000169_130 Hb_000169_130 Hb_000820_120--Hb_000169_130 Hb_000441_070 Hb_000441_070 Hb_000820_120--Hb_000441_070 Hb_102129_070 Hb_102129_070 Hb_000820_120--Hb_102129_070 Hb_000046_010 Hb_000046_010 Hb_000820_120--Hb_000046_010 Hb_000152_340 Hb_000152_340 Hb_000820_120--Hb_000152_340 Hb_000345_140 Hb_000345_140 Hb_000820_120--Hb_000345_140 Hb_002636_180--Hb_002890_090 Hb_002636_180--Hb_000345_140 Hb_000976_210 Hb_000976_210 Hb_002636_180--Hb_000976_210 Hb_000330_040 Hb_000330_040 Hb_002636_180--Hb_000330_040 Hb_001967_030 Hb_001967_030 Hb_002636_180--Hb_001967_030 Hb_002636_180--Hb_000820_120 Hb_006831_110 Hb_006831_110 Hb_000071_030--Hb_006831_110 Hb_000680_090 Hb_000680_090 Hb_000071_030--Hb_000680_090 Hb_002042_140 Hb_002042_140 Hb_000071_030--Hb_002042_140 Hb_005321_020 Hb_005321_020 Hb_000071_030--Hb_005321_020 Hb_000983_150 Hb_000983_150 Hb_000071_030--Hb_000983_150 Hb_000366_120 Hb_000366_120 Hb_000071_030--Hb_000366_120 Hb_000622_250 Hb_000622_250 Hb_000627_180--Hb_000622_250 Hb_000236_410 Hb_000236_410 Hb_000627_180--Hb_000236_410 Hb_000069_410 Hb_000069_410 Hb_000627_180--Hb_000069_410 Hb_000627_180--Hb_002636_180 Hb_005214_090 Hb_005214_090 Hb_000627_180--Hb_005214_090 Hb_000925_160 Hb_000925_160 Hb_000627_180--Hb_000925_160 Hb_061411_010--Hb_000627_180 Hb_003777_160 Hb_003777_160 Hb_061411_010--Hb_003777_160 Hb_065525_060 Hb_065525_060 Hb_061411_010--Hb_065525_060 Hb_000243_380 Hb_000243_380 Hb_061411_010--Hb_000243_380 Hb_061411_010--Hb_002636_180 Hb_061411_010--Hb_000820_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.813847 1.06976 0.447999 0.355358 0.749026 0.513615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.545443 0.0857249 0.743728 0.705394 0.164475

CAGE analysis