Hb_071072_010

Information

Type -
Description -
Location Contig71072: 17-955
Sequence    

Annotation

kegg
ID rcu:RCOM_1487620
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012069263.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067L9R0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24838 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55277: 206-1021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071072_010 0.0 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_000366_050 0.1240981182 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
3 Hb_005539_100 0.1374905673 - - nucleoside transporter, putative [Ricinus communis]
4 Hb_032202_050 0.1434643587 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
5 Hb_011381_070 0.1445735975 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
6 Hb_002073_020 0.1453683698 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
7 Hb_000748_110 0.1496382218 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
8 Hb_172676_010 0.1502330159 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
9 Hb_002375_060 0.1517606598 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
10 Hb_001141_060 0.1532769869 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
11 Hb_000077_210 0.1561042131 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
12 Hb_001863_340 0.1590324413 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
13 Hb_001158_120 0.1603877826 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
14 Hb_011287_060 0.1632372216 - - -
15 Hb_006911_020 0.1638372848 - - CC-NBS-LRR protein isoform 1 [Theobroma cacao]
16 Hb_001102_090 0.1660777393 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
17 Hb_001951_240 0.1683805238 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
18 Hb_008021_010 0.168563544 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
19 Hb_000649_300 0.169819797 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
20 Hb_002030_110 0.1701889756 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]

Gene co-expression network

sample Hb_071072_010 Hb_071072_010 Hb_000366_050 Hb_000366_050 Hb_071072_010--Hb_000366_050 Hb_005539_100 Hb_005539_100 Hb_071072_010--Hb_005539_100 Hb_032202_050 Hb_032202_050 Hb_071072_010--Hb_032202_050 Hb_011381_070 Hb_011381_070 Hb_071072_010--Hb_011381_070 Hb_002073_020 Hb_002073_020 Hb_071072_010--Hb_002073_020 Hb_000748_110 Hb_000748_110 Hb_071072_010--Hb_000748_110 Hb_000366_050--Hb_011381_070 Hb_001158_120 Hb_001158_120 Hb_000366_050--Hb_001158_120 Hb_002609_290 Hb_002609_290 Hb_000366_050--Hb_002609_290 Hb_000366_050--Hb_005539_100 Hb_000329_790 Hb_000329_790 Hb_000366_050--Hb_000329_790 Hb_001294_040 Hb_001294_040 Hb_000366_050--Hb_001294_040 Hb_172676_010 Hb_172676_010 Hb_005539_100--Hb_172676_010 Hb_005539_100--Hb_011381_070 Hb_005539_100--Hb_001158_120 Hb_005539_100--Hb_002073_020 Hb_000369_070 Hb_000369_070 Hb_005539_100--Hb_000369_070 Hb_005394_010 Hb_005394_010 Hb_032202_050--Hb_005394_010 Hb_005496_160 Hb_005496_160 Hb_032202_050--Hb_005496_160 Hb_033930_010 Hb_033930_010 Hb_032202_050--Hb_033930_010 Hb_011671_110 Hb_011671_110 Hb_032202_050--Hb_011671_110 Hb_002609_190 Hb_002609_190 Hb_032202_050--Hb_002609_190 Hb_003216_050 Hb_003216_050 Hb_032202_050--Hb_003216_050 Hb_011381_070--Hb_001158_120 Hb_000035_490 Hb_000035_490 Hb_011381_070--Hb_000035_490 Hb_011381_070--Hb_002609_290 Hb_011381_070--Hb_001294_040 Hb_132840_020 Hb_132840_020 Hb_011381_070--Hb_132840_020 Hb_002073_020--Hb_172676_010 Hb_001951_240 Hb_001951_240 Hb_002073_020--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_002073_020--Hb_000649_300 Hb_001053_200 Hb_001053_200 Hb_002073_020--Hb_001053_200 Hb_002073_020--Hb_005496_160 Hb_005214_070 Hb_005214_070 Hb_000748_110--Hb_005214_070 Hb_000834_050 Hb_000834_050 Hb_000748_110--Hb_000834_050 Hb_001408_020 Hb_001408_020 Hb_000748_110--Hb_001408_020 Hb_001863_340 Hb_001863_340 Hb_000748_110--Hb_001863_340 Hb_007290_070 Hb_007290_070 Hb_000748_110--Hb_007290_070 Hb_000077_210 Hb_000077_210 Hb_000748_110--Hb_000077_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60397 14.9527 12.507 7.80118 1.50291 3.14786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0548427 0 0.395222 2.97074 7.02552

CAGE analysis