Hb_029351_010

Information

Type -
Description -
Location Contig29351: 3077-19365
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19250g
description POPTRDRAFT_867715; hypothetical protein
nr
ID XP_012071597.1
description PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q54FK1
description HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1
trembl
ID A0A067L3W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04102 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30735: 3085-19377 , PASA_asmbl_30736: 3815-4040
cDNA
(Sanger)
(ID:Location)		 004_C19.ab1: 13085-19377 , 008_F19.ab1: 3331-19303 , 016_B21.ab1: 3332-19303 , 031_K20.ab1: 3331-19303

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029351_010 0.0 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
2 Hb_001517_050 0.0948001625 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
3 Hb_000003_780 0.0948252128 - - hexokinase [Manihot esculenta]
4 Hb_001022_030 0.0949055691 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
5 Hb_000051_060 0.0956772424 - - conserved hypothetical protein [Ricinus communis]
6 Hb_093666_010 0.0957877559 - - BnaC05g06620D [Brassica napus]
7 Hb_000907_180 0.0962825433 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
8 Hb_002874_180 0.1014097935 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
9 Hb_005946_040 0.1020600957 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
10 Hb_009225_020 0.1024321308 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
11 Hb_003728_100 0.1045157851 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
12 Hb_005162_110 0.1067257186 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
13 Hb_012438_030 0.1070219809 - - PREDICTED: protein sym-1 [Jatropha curcas]
14 Hb_000789_320 0.1071488961 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
15 Hb_171554_010 0.1081545376 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
16 Hb_004440_020 0.1099564774 - - AP-3 complex subunit sigma-1, putative [Ricinus communis]
17 Hb_000207_300 0.1103788908 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
18 Hb_004109_120 0.1114149468 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
19 Hb_000003_170 0.1121683028 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
20 Hb_107879_010 0.1122321644 - - phosphoglycerate mutase, putative [Ricinus communis]

Gene co-expression network

sample Hb_029351_010 Hb_029351_010 Hb_001517_050 Hb_001517_050 Hb_029351_010--Hb_001517_050 Hb_000003_780 Hb_000003_780 Hb_029351_010--Hb_000003_780 Hb_001022_030 Hb_001022_030 Hb_029351_010--Hb_001022_030 Hb_000051_060 Hb_000051_060 Hb_029351_010--Hb_000051_060 Hb_093666_010 Hb_093666_010 Hb_029351_010--Hb_093666_010 Hb_000907_180 Hb_000907_180 Hb_029351_010--Hb_000907_180 Hb_000300_260 Hb_000300_260 Hb_001517_050--Hb_000300_260 Hb_002284_150 Hb_002284_150 Hb_001517_050--Hb_002284_150 Hb_000789_320 Hb_000789_320 Hb_001517_050--Hb_000789_320 Hb_006816_100 Hb_006816_100 Hb_001517_050--Hb_006816_100 Hb_012340_090 Hb_012340_090 Hb_001517_050--Hb_012340_090 Hb_003213_010 Hb_003213_010 Hb_001517_050--Hb_003213_010 Hb_002631_240 Hb_002631_240 Hb_000003_780--Hb_002631_240 Hb_005946_040 Hb_005946_040 Hb_000003_780--Hb_005946_040 Hb_002874_180 Hb_002874_180 Hb_000003_780--Hb_002874_180 Hb_007002_020 Hb_007002_020 Hb_000003_780--Hb_007002_020 Hb_001900_140 Hb_001900_140 Hb_000003_780--Hb_001900_140 Hb_001587_180 Hb_001587_180 Hb_000003_780--Hb_001587_180 Hb_001022_030--Hb_002874_180 Hb_156850_100 Hb_156850_100 Hb_001022_030--Hb_156850_100 Hb_003728_100 Hb_003728_100 Hb_001022_030--Hb_003728_100 Hb_000539_050 Hb_000539_050 Hb_001022_030--Hb_000539_050 Hb_005539_010 Hb_005539_010 Hb_001022_030--Hb_005539_010 Hb_009225_020 Hb_009225_020 Hb_001022_030--Hb_009225_020 Hb_001935_100 Hb_001935_100 Hb_000051_060--Hb_001935_100 Hb_005162_110 Hb_005162_110 Hb_000051_060--Hb_005162_110 Hb_003752_070 Hb_003752_070 Hb_000051_060--Hb_003752_070 Hb_021650_010 Hb_021650_010 Hb_000051_060--Hb_021650_010 Hb_002876_220 Hb_002876_220 Hb_000051_060--Hb_002876_220 Hb_001232_150 Hb_001232_150 Hb_000051_060--Hb_001232_150 Hb_065525_080 Hb_065525_080 Hb_093666_010--Hb_065525_080 Hb_113853_010 Hb_113853_010 Hb_093666_010--Hb_113853_010 Hb_030414_040 Hb_030414_040 Hb_093666_010--Hb_030414_040 Hb_001623_270 Hb_001623_270 Hb_093666_010--Hb_001623_270 Hb_021374_030 Hb_021374_030 Hb_093666_010--Hb_021374_030 Hb_183433_010 Hb_183433_010 Hb_093666_010--Hb_183433_010 Hb_003266_030 Hb_003266_030 Hb_000907_180--Hb_003266_030 Hb_004452_120 Hb_004452_120 Hb_000907_180--Hb_004452_120 Hb_001882_010 Hb_001882_010 Hb_000907_180--Hb_001882_010 Hb_005127_030 Hb_005127_030 Hb_000907_180--Hb_005127_030 Hb_000907_180--Hb_001022_030 Hb_012150_030 Hb_012150_030 Hb_000907_180--Hb_012150_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.32 7.95234 35.1764 13.6103 7.15341 17.1021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7592 14.8321 9.3582 10.2251 20.3712

CAGE analysis