Hb_027295_040

Information

Type -
Description -
Location Contig27295: 35377-38281
Sequence    

Annotation

kegg
ID rcu:RCOM_1719540
description hypothetical protein
nr
ID EYU39195.1
description hypothetical protein MIMGU_mgv1a017500mg [Erythranthe guttata]
swissprot
ID -
description -
trembl
ID A0A022RJW8
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017500mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28507: 37487-38408
cDNA
(Sanger)
(ID:Location)		 017_M13.ab1: 38187-38358 , 052_A20.ab1: 37487-38408 , 052_E21.ab1: 37487-38408

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027295_040 0.0 - - hypothetical protein MIMGU_mgv1a017500mg [Erythranthe guttata]
2 Hb_001767_120 0.1964124763 - - -
3 Hb_134310_020 0.1985675185 - - PREDICTED: putative cytochrome c oxidase subunit 5C-4-like [Citrus sinensis]
4 Hb_002411_130 0.1998588891 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
5 Hb_001546_050 0.2021276821 - - -
6 Hb_005511_060 0.2050805147 - - conserved hypothetical protein [Ricinus communis]
7 Hb_178041_010 0.2056175147 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
8 Hb_001722_020 0.2071702985 - - -
9 Hb_000159_110 0.20745422 - - PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
10 Hb_088774_010 0.214482186 - - -
11 Hb_001005_150 0.2149906674 - - -
12 Hb_071923_010 0.2219118281 - - -
13 Hb_130134_020 0.2235121738 - - -
14 Hb_001675_060 0.2247420188 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
15 Hb_130134_030 0.2261554114 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
16 Hb_000617_170 0.227141175 - - -
17 Hb_095831_010 0.2284115039 - - PREDICTED: uncharacterized protein LOC104884649 [Beta vulgaris subsp. vulgaris]
18 Hb_000295_100 0.2313647439 - - -
19 Hb_002639_070 0.231385712 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
20 Hb_003297_020 0.2313943552 - - unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_027295_040 Hb_027295_040 Hb_001767_120 Hb_001767_120 Hb_027295_040--Hb_001767_120 Hb_134310_020 Hb_134310_020 Hb_027295_040--Hb_134310_020 Hb_002411_130 Hb_002411_130 Hb_027295_040--Hb_002411_130 Hb_001546_050 Hb_001546_050 Hb_027295_040--Hb_001546_050 Hb_005511_060 Hb_005511_060 Hb_027295_040--Hb_005511_060 Hb_178041_010 Hb_178041_010 Hb_027295_040--Hb_178041_010 Hb_005714_130 Hb_005714_130 Hb_001767_120--Hb_005714_130 Hb_001752_040 Hb_001752_040 Hb_001767_120--Hb_001752_040 Hb_002508_010 Hb_002508_010 Hb_001767_120--Hb_002508_010 Hb_128998_010 Hb_128998_010 Hb_001767_120--Hb_128998_010 Hb_121467_010 Hb_121467_010 Hb_001767_120--Hb_121467_010 Hb_171788_010 Hb_171788_010 Hb_001767_120--Hb_171788_010 Hb_130134_020 Hb_130134_020 Hb_134310_020--Hb_130134_020 Hb_000617_170 Hb_000617_170 Hb_134310_020--Hb_000617_170 Hb_115578_010 Hb_115578_010 Hb_134310_020--Hb_115578_010 Hb_000200_040 Hb_000200_040 Hb_134310_020--Hb_000200_040 Hb_000295_090 Hb_000295_090 Hb_134310_020--Hb_000295_090 Hb_000976_030 Hb_000976_030 Hb_134310_020--Hb_000976_030 Hb_000159_110 Hb_000159_110 Hb_002411_130--Hb_000159_110 Hb_002411_130--Hb_001752_040 Hb_009119_030 Hb_009119_030 Hb_002411_130--Hb_009119_030 Hb_002411_130--Hb_121467_010 Hb_003376_070 Hb_003376_070 Hb_002411_130--Hb_003376_070 Hb_002411_130--Hb_001767_120 Hb_001546_050--Hb_000159_110 Hb_009543_020 Hb_009543_020 Hb_001546_050--Hb_009543_020 Hb_000051_170 Hb_000051_170 Hb_001546_050--Hb_000051_170 Hb_000342_080 Hb_000342_080 Hb_001546_050--Hb_000342_080 Hb_003405_050 Hb_003405_050 Hb_001546_050--Hb_003405_050 Hb_003711_040 Hb_003711_040 Hb_001546_050--Hb_003711_040 Hb_000696_350 Hb_000696_350 Hb_005511_060--Hb_000696_350 Hb_025814_010 Hb_025814_010 Hb_005511_060--Hb_025814_010 Hb_000045_070 Hb_000045_070 Hb_005511_060--Hb_000045_070 Hb_000295_100 Hb_000295_100 Hb_005511_060--Hb_000295_100 Hb_095831_010 Hb_095831_010 Hb_005511_060--Hb_095831_010 Hb_083043_010 Hb_083043_010 Hb_005511_060--Hb_083043_010 Hb_002742_070 Hb_002742_070 Hb_178041_010--Hb_002742_070 Hb_051437_010 Hb_051437_010 Hb_178041_010--Hb_051437_010 Hb_130134_030 Hb_130134_030 Hb_178041_010--Hb_130134_030 Hb_002815_060 Hb_002815_060 Hb_178041_010--Hb_002815_060 Hb_088428_010 Hb_088428_010 Hb_178041_010--Hb_088428_010 Hb_178041_010--Hb_171788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
256.386 145.768 125.424 509.758 957.695 2469.88
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
252.424 211.967 66.8339 30.2267 189.468

CAGE analysis