Hb_024399_020

Information

Type -
Description -
Location Contig24399: 10375-13127
Sequence    

Annotation

kegg
ID rcu:RCOM_1324230
description electron transporter, putative
nr
ID XP_002520001.1
description electron transporter, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1Y2
description Electron transporter, putative OS=Ricinus communis GN=RCOM_1324230 PE=4 SV=1
Gene Ontology
ID GO:0009534
description rubredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25459: 10390-12192 , PASA_asmbl_25460: 11727-13154
cDNA
(Sanger)
(ID:Location)		 023_A21.ab1: 10390-12192 , 052_D19.ab1: 10390-12192

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024399_020 0.0 - - electron transporter, putative [Ricinus communis]
2 Hb_002217_140 0.1249980232 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
3 Hb_001300_130 0.1405578104 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
4 Hb_005563_040 0.142587113 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
5 Hb_000802_050 0.1452832486 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
6 Hb_000977_270 0.1475684931 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
7 Hb_000684_430 0.1536391664 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
8 Hb_001579_280 0.1549417427 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Jatropha curcas]
9 Hb_158144_020 0.1570525679 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
10 Hb_001723_030 0.1598392534 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
11 Hb_004055_160 0.1600337929 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
12 Hb_003494_030 0.1609141342 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
13 Hb_000803_170 0.1620806675 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
14 Hb_000667_140 0.164424228 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
15 Hb_002304_180 0.1651447985 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
16 Hb_000402_170 0.1674666286 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
17 Hb_005488_160 0.1682039287 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
18 Hb_000130_330 0.1689998417 transcription factor TF Family: TCP PREDICTED: transcription factor TCP3-like [Jatropha curcas]
19 Hb_006829_080 0.1694569831 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
20 Hb_189003_060 0.1711001803 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_024399_020 Hb_024399_020 Hb_002217_140 Hb_002217_140 Hb_024399_020--Hb_002217_140 Hb_001300_130 Hb_001300_130 Hb_024399_020--Hb_001300_130 Hb_005563_040 Hb_005563_040 Hb_024399_020--Hb_005563_040 Hb_000802_050 Hb_000802_050 Hb_024399_020--Hb_000802_050 Hb_000977_270 Hb_000977_270 Hb_024399_020--Hb_000977_270 Hb_000684_430 Hb_000684_430 Hb_024399_020--Hb_000684_430 Hb_002217_140--Hb_000684_430 Hb_001723_030 Hb_001723_030 Hb_002217_140--Hb_001723_030 Hb_004055_160 Hb_004055_160 Hb_002217_140--Hb_004055_160 Hb_000803_240 Hb_000803_240 Hb_002217_140--Hb_000803_240 Hb_006829_080 Hb_006829_080 Hb_002217_140--Hb_006829_080 Hb_002217_140--Hb_000802_050 Hb_001300_130--Hb_000802_050 Hb_027298_020 Hb_027298_020 Hb_001300_130--Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_001300_130--Hb_000703_070 Hb_003549_140 Hb_003549_140 Hb_001300_130--Hb_003549_140 Hb_001300_130--Hb_000684_430 Hb_001300_130--Hb_005563_040 Hb_000803_170 Hb_000803_170 Hb_005563_040--Hb_000803_170 Hb_005488_160 Hb_005488_160 Hb_005563_040--Hb_005488_160 Hb_002411_100 Hb_002411_100 Hb_005563_040--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_005563_040--Hb_000442_070 Hb_001579_280 Hb_001579_280 Hb_005563_040--Hb_001579_280 Hb_010557_010 Hb_010557_010 Hb_005563_040--Hb_010557_010 Hb_000802_050--Hb_006829_080 Hb_000802_050--Hb_003549_140 Hb_002232_380 Hb_002232_380 Hb_000802_050--Hb_002232_380 Hb_000005_130 Hb_000005_130 Hb_000802_050--Hb_000005_130 Hb_000802_050--Hb_000684_430 Hb_007044_250 Hb_007044_250 Hb_000977_270--Hb_007044_250 Hb_003106_170 Hb_003106_170 Hb_000977_270--Hb_003106_170 Hb_036790_120 Hb_036790_120 Hb_000977_270--Hb_036790_120 Hb_001484_080 Hb_001484_080 Hb_000977_270--Hb_001484_080 Hb_002304_180 Hb_002304_180 Hb_000977_270--Hb_002304_180 Hb_003752_060 Hb_003752_060 Hb_000977_270--Hb_003752_060 Hb_001959_060 Hb_001959_060 Hb_000684_430--Hb_001959_060 Hb_000684_430--Hb_004055_160 Hb_000684_430--Hb_006829_080 Hb_148146_010 Hb_148146_010 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.22506 1.90334 46.3451 10.6775 6.08096 10.2309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.39197 3.34542 12.7714 9.87616 84.4865

CAGE analysis