Hb_021576_090

Information

Type -
Description -
Location Contig21576: 44497-47178
Sequence    

Annotation

kegg
ID rcu:RCOM_0405710
description hypothetical protein
nr
ID XP_002532403.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O48533
description Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1
trembl
ID B9T2D4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0405710 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein polychome

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002284_260 0.1367092059 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
3 Hb_020301_020 0.1383805768 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_124677_050 0.1392555405 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003360_010 0.142087051 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
6 Hb_003656_080 0.1467045311 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
7 Hb_003106_090 0.155648603 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
8 Hb_000272_010 0.1624772541 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
9 Hb_000030_080 0.1628418393 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
10 Hb_001263_030 0.1631082363 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
11 Hb_005183_150 0.1658419969 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
12 Hb_000260_670 0.1661470872 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
13 Hb_005276_090 0.167196559 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
14 Hb_004531_060 0.1678565906 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
15 Hb_024682_030 0.1699567332 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
16 Hb_000094_230 0.1704847191 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
17 Hb_159809_040 0.1719419824 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005332_030 0.174656942 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007632_210 0.1786442814 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
20 Hb_002030_130 0.179518799 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_021576_090 Hb_021576_090 Hb_002284_260 Hb_002284_260 Hb_021576_090--Hb_002284_260 Hb_020301_020 Hb_020301_020 Hb_021576_090--Hb_020301_020 Hb_124677_050 Hb_124677_050 Hb_021576_090--Hb_124677_050 Hb_003360_010 Hb_003360_010 Hb_021576_090--Hb_003360_010 Hb_003656_080 Hb_003656_080 Hb_021576_090--Hb_003656_080 Hb_003106_090 Hb_003106_090 Hb_021576_090--Hb_003106_090 Hb_093458_020 Hb_093458_020 Hb_002284_260--Hb_093458_020 Hb_002284_260--Hb_124677_050 Hb_004007_130 Hb_004007_130 Hb_002284_260--Hb_004007_130 Hb_002871_130 Hb_002871_130 Hb_002284_260--Hb_002871_130 Hb_002284_260--Hb_003360_010 Hb_000077_110 Hb_000077_110 Hb_002284_260--Hb_000077_110 Hb_000661_150 Hb_000661_150 Hb_020301_020--Hb_000661_150 Hb_005183_150 Hb_005183_150 Hb_020301_020--Hb_005183_150 Hb_001699_270 Hb_001699_270 Hb_020301_020--Hb_001699_270 Hb_007632_210 Hb_007632_210 Hb_020301_020--Hb_007632_210 Hb_000094_230 Hb_000094_230 Hb_020301_020--Hb_000094_230 Hb_005542_150 Hb_005542_150 Hb_020301_020--Hb_005542_150 Hb_124677_050--Hb_003360_010 Hb_124677_050--Hb_007632_210 Hb_124677_050--Hb_005183_150 Hb_002311_090 Hb_002311_090 Hb_124677_050--Hb_002311_090 Hb_003228_050 Hb_003228_050 Hb_124677_050--Hb_003228_050 Hb_024682_030 Hb_024682_030 Hb_003360_010--Hb_024682_030 Hb_000260_670 Hb_000260_670 Hb_003360_010--Hb_000260_670 Hb_000431_100 Hb_000431_100 Hb_003360_010--Hb_000431_100 Hb_001524_120 Hb_001524_120 Hb_003360_010--Hb_001524_120 Hb_003360_010--Hb_005183_150 Hb_006588_100 Hb_006588_100 Hb_003656_080--Hb_006588_100 Hb_004531_060 Hb_004531_060 Hb_003656_080--Hb_004531_060 Hb_005332_030 Hb_005332_030 Hb_003656_080--Hb_005332_030 Hb_020025_030 Hb_020025_030 Hb_003656_080--Hb_020025_030 Hb_001950_090 Hb_001950_090 Hb_003656_080--Hb_001950_090 Hb_000140_200 Hb_000140_200 Hb_003656_080--Hb_000140_200 Hb_005276_090 Hb_005276_090 Hb_003106_090--Hb_005276_090 Hb_000085_360 Hb_000085_360 Hb_003106_090--Hb_000085_360 Hb_000038_070 Hb_000038_070 Hb_003106_090--Hb_000038_070 Hb_003106_090--Hb_005542_150 Hb_000317_120 Hb_000317_120 Hb_003106_090--Hb_000317_120 Hb_000856_390 Hb_000856_390 Hb_003106_090--Hb_000856_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.159481 3.71582 2.43936 0 0.275862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.110907 0 1.01123 0.221878

CAGE analysis