Hb_012753_020

Information

Type -
Description -
Location Contig12753: 5949-11331
Sequence    

Annotation

kegg
ID rcu:RCOM_1684240
description hypothetical protein
nr
ID XP_002509710.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B6K8A0
description rRNA biogenesis protein rrp36 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rrp36 PE=3 SV=2
trembl
ID B9RC26
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1684240 PE=4 SV=1
Gene Ontology
ID GO:0005730
description ribosomal rna processing protein 36 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000640_020 0.1138133058 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
3 Hb_002431_020 0.1222167087 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
4 Hb_001754_170 0.1225042926 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
5 Hb_003073_200 0.1231093965 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
6 Hb_000211_110 0.1291133992 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
7 Hb_001894_030 0.1302533399 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
8 Hb_003788_050 0.1317303668 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
9 Hb_011612_010 0.1331381785 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
10 Hb_023020_060 0.1337111022 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
11 Hb_000521_020 0.1362311137 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
12 Hb_001140_250 0.1367752471 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
13 Hb_002701_080 0.1380316661 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
14 Hb_000331_160 0.138278361 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
15 Hb_004586_180 0.1383792059 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
16 Hb_000645_150 0.1411322952 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000115_310 0.1420675118 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
18 Hb_000002_330 0.1422101147 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
19 Hb_007747_060 0.1427679695 - - PREDICTED: mitochondrial fission protein ELM1 isoform X1 [Jatropha curcas]
20 Hb_005895_040 0.1430643463 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]

Gene co-expression network

sample Hb_012753_020 Hb_012753_020 Hb_000640_020 Hb_000640_020 Hb_012753_020--Hb_000640_020 Hb_002431_020 Hb_002431_020 Hb_012753_020--Hb_002431_020 Hb_001754_170 Hb_001754_170 Hb_012753_020--Hb_001754_170 Hb_003073_200 Hb_003073_200 Hb_012753_020--Hb_003073_200 Hb_000211_110 Hb_000211_110 Hb_012753_020--Hb_000211_110 Hb_001894_030 Hb_001894_030 Hb_012753_020--Hb_001894_030 Hb_023020_060 Hb_023020_060 Hb_000640_020--Hb_023020_060 Hb_000640_020--Hb_001894_030 Hb_000343_210 Hb_000343_210 Hb_000640_020--Hb_000343_210 Hb_000504_160 Hb_000504_160 Hb_000640_020--Hb_000504_160 Hb_000104_080 Hb_000104_080 Hb_000640_020--Hb_000104_080 Hb_028707_090 Hb_028707_090 Hb_000640_020--Hb_028707_090 Hb_000787_090 Hb_000787_090 Hb_002431_020--Hb_000787_090 Hb_001502_060 Hb_001502_060 Hb_002431_020--Hb_001502_060 Hb_132697_010 Hb_132697_010 Hb_002431_020--Hb_132697_010 Hb_001152_030 Hb_001152_030 Hb_002431_020--Hb_001152_030 Hb_000179_140 Hb_000179_140 Hb_002431_020--Hb_000179_140 Hb_002477_130 Hb_002477_130 Hb_002431_020--Hb_002477_130 Hb_007534_040 Hb_007534_040 Hb_001754_170--Hb_007534_040 Hb_004374_150 Hb_004374_150 Hb_001754_170--Hb_004374_150 Hb_000236_300 Hb_000236_300 Hb_001754_170--Hb_000236_300 Hb_175612_010 Hb_175612_010 Hb_001754_170--Hb_175612_010 Hb_000107_170 Hb_000107_170 Hb_001754_170--Hb_000107_170 Hb_000617_220 Hb_000617_220 Hb_001754_170--Hb_000617_220 Hb_000645_150 Hb_000645_150 Hb_003073_200--Hb_000645_150 Hb_007803_010 Hb_007803_010 Hb_003073_200--Hb_007803_010 Hb_000002_330 Hb_000002_330 Hb_003073_200--Hb_000002_330 Hb_000236_370 Hb_000236_370 Hb_003073_200--Hb_000236_370 Hb_000009_590 Hb_000009_590 Hb_003073_200--Hb_000009_590 Hb_000421_120 Hb_000421_120 Hb_003073_200--Hb_000421_120 Hb_000211_110--Hb_001894_030 Hb_001357_380 Hb_001357_380 Hb_000211_110--Hb_001357_380 Hb_000920_280 Hb_000920_280 Hb_000211_110--Hb_000920_280 Hb_000211_110--Hb_000640_020 Hb_011848_010 Hb_011848_010 Hb_000211_110--Hb_011848_010 Hb_000059_140 Hb_000059_140 Hb_000211_110--Hb_000059_140 Hb_001894_030--Hb_000617_220 Hb_001894_030--Hb_001357_380 Hb_001894_030--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_001894_030--Hb_004701_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.52625 2.93771 0.9406 2.12685 8.07867 4.64314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.55732 3.04496 0.810361 3.12427 0.526813

CAGE analysis