Hb_011942_050

Information

Type -
Description -
Location Contig11942: 27532-31778
Sequence    

Annotation

kegg
ID egr:104450658
description probable serine incorporator
nr
ID XP_012067448.1
description PREDICTED: probable serine incorporator [Jatropha curcas]
swissprot
ID Q5R533
description Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1
trembl
ID A0A067L0E2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26944 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable serine incorporator

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05742: 27581-32608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011942_050 0.0 - - PREDICTED: probable serine incorporator [Jatropha curcas]
2 Hb_025477_040 0.0948924312 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
3 Hb_000130_020 0.1002284888 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
4 Hb_000365_030 0.1118307525 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
5 Hb_000635_030 0.1138354925 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
6 Hb_001366_210 0.115790841 - - cathepsin B, putative [Ricinus communis]
7 Hb_032202_200 0.1157984811 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_021297_050 0.1226522841 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
9 Hb_001369_130 0.1226573746 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
10 Hb_011618_080 0.1260348678 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
11 Hb_141069_010 0.1265679254 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004627_060 0.1268499931 - - PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
13 Hb_004974_010 0.1271421659 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
14 Hb_000261_100 0.1292166903 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
15 Hb_000667_030 0.1316217086 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
16 Hb_001318_020 0.1323270071 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
17 Hb_000680_110 0.1330524011 - - Endosomal P24A protein precursor, putative [Ricinus communis]
18 Hb_002301_300 0.1332242855 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
19 Hb_004875_030 0.1335028718 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
20 Hb_178968_050 0.1340347477 - - PREDICTED: probable serine incorporator [Jatropha curcas]

Gene co-expression network

sample Hb_011942_050 Hb_011942_050 Hb_025477_040 Hb_025477_040 Hb_011942_050--Hb_025477_040 Hb_000130_020 Hb_000130_020 Hb_011942_050--Hb_000130_020 Hb_000365_030 Hb_000365_030 Hb_011942_050--Hb_000365_030 Hb_000635_030 Hb_000635_030 Hb_011942_050--Hb_000635_030 Hb_001366_210 Hb_001366_210 Hb_011942_050--Hb_001366_210 Hb_032202_200 Hb_032202_200 Hb_011942_050--Hb_032202_200 Hb_025477_040--Hb_032202_200 Hb_123903_010 Hb_123903_010 Hb_025477_040--Hb_123903_010 Hb_002815_030 Hb_002815_030 Hb_025477_040--Hb_002815_030 Hb_012053_080 Hb_012053_080 Hb_025477_040--Hb_012053_080 Hb_002329_040 Hb_002329_040 Hb_025477_040--Hb_002329_040 Hb_021297_050 Hb_021297_050 Hb_025477_040--Hb_021297_050 Hb_000130_020--Hb_000635_030 Hb_178968_050 Hb_178968_050 Hb_000130_020--Hb_178968_050 Hb_000120_280 Hb_000120_280 Hb_000130_020--Hb_000120_280 Hb_140049_080 Hb_140049_080 Hb_000130_020--Hb_140049_080 Hb_001318_020 Hb_001318_020 Hb_000130_020--Hb_001318_020 Hb_141069_010 Hb_141069_010 Hb_000130_020--Hb_141069_010 Hb_000365_030--Hb_000130_020 Hb_000365_030--Hb_178968_050 Hb_001733_030 Hb_001733_030 Hb_000365_030--Hb_001733_030 Hb_004109_370 Hb_004109_370 Hb_000365_030--Hb_004109_370 Hb_000030_060 Hb_000030_060 Hb_000365_030--Hb_000030_060 Hb_000365_030--Hb_000635_030 Hb_000635_030--Hb_141069_010 Hb_001668_010 Hb_001668_010 Hb_000635_030--Hb_001668_010 Hb_000635_030--Hb_000120_280 Hb_002259_080 Hb_002259_080 Hb_000635_030--Hb_002259_080 Hb_004267_040 Hb_004267_040 Hb_000635_030--Hb_004267_040 Hb_005731_090 Hb_005731_090 Hb_001366_210--Hb_005731_090 Hb_030627_060 Hb_030627_060 Hb_001366_210--Hb_030627_060 Hb_007635_030 Hb_007635_030 Hb_001366_210--Hb_007635_030 Hb_000375_130 Hb_000375_130 Hb_001366_210--Hb_000375_130 Hb_001454_280 Hb_001454_280 Hb_001366_210--Hb_001454_280 Hb_002174_020 Hb_002174_020 Hb_001366_210--Hb_002174_020 Hb_143629_110 Hb_143629_110 Hb_032202_200--Hb_143629_110 Hb_032202_200--Hb_123903_010 Hb_003163_020 Hb_003163_020 Hb_032202_200--Hb_003163_020 Hb_011930_160 Hb_011930_160 Hb_032202_200--Hb_011930_160 Hb_010174_040 Hb_010174_040 Hb_032202_200--Hb_010174_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3265 24.4232 16.0552 35.5215 53.5958 20.2795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2245 7.42133 16.5091 35.8327 22.1883

CAGE analysis