Hb_010907_030

Information

Type -
Description -
Location Contig10907: 5951-18665
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02775: 17885-18612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010907_030 0.0 - - -
2 Hb_002232_040 0.1262233584 - - -
3 Hb_002346_010 0.1293991587 - - -
4 Hb_000487_210 0.1378297776 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
5 Hb_004787_110 0.1499867158 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002585_040 0.1511917248 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
7 Hb_000003_720 0.1520010379 - - hypothetical protein POPTR_0003s04720g [Populus trichocarpa]
8 Hb_003935_020 0.1520164086 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000144_100 0.1533332006 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
10 Hb_002170_040 0.153476574 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000979_170 0.1539339784 - - clathrin assembly protein, putative [Ricinus communis]
12 Hb_007451_010 0.1542374115 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
13 Hb_000538_240 0.1558436774 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
14 Hb_005463_050 0.156785991 - - PREDICTED: uncharacterized protein LOC105632514 [Jatropha curcas]
15 Hb_027472_040 0.1575562832 - - SKP1 [Hevea brasiliensis]
16 Hb_000530_010 0.1577865595 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
17 Hb_011224_060 0.1579634775 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
18 Hb_000676_260 0.1583937109 - - PREDICTED: uncharacterized protein LOC105639070 [Jatropha curcas]
19 Hb_000696_160 0.1597456516 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
20 Hb_000796_210 0.1601199969 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010907_030 Hb_010907_030 Hb_002232_040 Hb_002232_040 Hb_010907_030--Hb_002232_040 Hb_002346_010 Hb_002346_010 Hb_010907_030--Hb_002346_010 Hb_000487_210 Hb_000487_210 Hb_010907_030--Hb_000487_210 Hb_004787_110 Hb_004787_110 Hb_010907_030--Hb_004787_110 Hb_002585_040 Hb_002585_040 Hb_010907_030--Hb_002585_040 Hb_000003_720 Hb_000003_720 Hb_010907_030--Hb_000003_720 Hb_000096_170 Hb_000096_170 Hb_002232_040--Hb_000096_170 Hb_156635_010 Hb_156635_010 Hb_002232_040--Hb_156635_010 Hb_124953_020 Hb_124953_020 Hb_002232_040--Hb_124953_020 Hb_000538_240 Hb_000538_240 Hb_002232_040--Hb_000538_240 Hb_002105_100 Hb_002105_100 Hb_002232_040--Hb_002105_100 Hb_001016_150 Hb_001016_150 Hb_002232_040--Hb_001016_150 Hb_002346_010--Hb_004787_110 Hb_000457_100 Hb_000457_100 Hb_002346_010--Hb_000457_100 Hb_007576_080 Hb_007576_080 Hb_002346_010--Hb_007576_080 Hb_000676_260 Hb_000676_260 Hb_002346_010--Hb_000676_260 Hb_002346_010--Hb_002585_040 Hb_002320_040 Hb_002320_040 Hb_002346_010--Hb_002320_040 Hb_000487_210--Hb_002585_040 Hb_012753_170 Hb_012753_170 Hb_000487_210--Hb_012753_170 Hb_000979_170 Hb_000979_170 Hb_000487_210--Hb_000979_170 Hb_000679_310 Hb_000679_310 Hb_000487_210--Hb_000679_310 Hb_004970_090 Hb_004970_090 Hb_000487_210--Hb_004970_090 Hb_033834_030 Hb_033834_030 Hb_000487_210--Hb_033834_030 Hb_004787_110--Hb_007576_080 Hb_034552_030 Hb_034552_030 Hb_004787_110--Hb_034552_030 Hb_004787_110--Hb_002320_040 Hb_000331_060 Hb_000331_060 Hb_004787_110--Hb_000331_060 Hb_004787_110--Hb_002585_040 Hb_002585_040--Hb_007576_080 Hb_000563_230 Hb_000563_230 Hb_002585_040--Hb_000563_230 Hb_112798_020 Hb_112798_020 Hb_002585_040--Hb_112798_020 Hb_002296_050 Hb_002296_050 Hb_002585_040--Hb_002296_050 Hb_004032_430 Hb_004032_430 Hb_002585_040--Hb_004032_430 Hb_020581_010 Hb_020581_010 Hb_000003_720--Hb_020581_010 Hb_101733_030 Hb_101733_030 Hb_000003_720--Hb_101733_030 Hb_006637_070 Hb_006637_070 Hb_000003_720--Hb_006637_070 Hb_014109_040 Hb_014109_040 Hb_000003_720--Hb_014109_040 Hb_038172_010 Hb_038172_010 Hb_000003_720--Hb_038172_010 Hb_005784_040 Hb_005784_040 Hb_000003_720--Hb_005784_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.158318 0.177089 0.12377 0.216113 0.225391 0.105064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0849503 0.334178 0.0419873 0.124359 0.0467664

CAGE analysis