Hb_009569_030

Information

Type -
Description -
Location Contig9569: 46561-47625
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14840g
description POPTRDRAFT_807148; hypothetical protein
nr
ID XP_012079001.1
description PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
swissprot
ID Q9FL53
description Fasciclin-like arabinogalactan protein 21 OS=Arabidopsis thaliana GN=FLA21 PE=2 SV=1
trembl
ID A0A067K828
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13829 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63563: 46334-46681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009569_030 0.0 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
2 Hb_000297_140 0.1669435458 - - hypothetical protein RCOM_0293450 [Ricinus communis]
3 Hb_005253_020 0.1766231378 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
4 Hb_002900_180 0.1787915468 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
5 Hb_010883_180 0.1844795639 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
6 Hb_000011_280 0.1851461891 - - pectinesterase family protein [Populus trichocarpa]
7 Hb_000260_110 0.1870630102 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
8 Hb_000984_130 0.1872915072 - - tubulin [Ornithogalum longebracteatum]
9 Hb_006002_050 0.1886016728 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
10 Hb_000997_080 0.1887730492 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
11 Hb_000540_160 0.1900731946 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
12 Hb_000023_110 0.1904169055 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
13 Hb_000389_040 0.1909960062 - - PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Jatropha curcas]
14 Hb_002292_080 0.1922078442 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
15 Hb_000003_110 0.1953955667 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_003544_080 0.1962460017 - - Protein HVA22, putative [Ricinus communis]
17 Hb_002701_030 0.1964619259 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
18 Hb_001102_160 0.1979392079 - - PREDICTED: galacturonokinase [Jatropha curcas]
19 Hb_001663_060 0.1982135616 - - ribonuclease t2, putative [Ricinus communis]
20 Hb_025193_010 0.1988665637 - - PREDICTED: indole-3-acetic acid-amido synthetase GH3.17-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009569_030 Hb_009569_030 Hb_000297_140 Hb_000297_140 Hb_009569_030--Hb_000297_140 Hb_005253_020 Hb_005253_020 Hb_009569_030--Hb_005253_020 Hb_002900_180 Hb_002900_180 Hb_009569_030--Hb_002900_180 Hb_010883_180 Hb_010883_180 Hb_009569_030--Hb_010883_180 Hb_000011_280 Hb_000011_280 Hb_009569_030--Hb_000011_280 Hb_000260_110 Hb_000260_110 Hb_009569_030--Hb_000260_110 Hb_000820_110 Hb_000820_110 Hb_000297_140--Hb_000820_110 Hb_006002_050 Hb_006002_050 Hb_000297_140--Hb_006002_050 Hb_030565_100 Hb_030565_100 Hb_000297_140--Hb_030565_100 Hb_000997_080 Hb_000997_080 Hb_000297_140--Hb_000997_080 Hb_000297_140--Hb_000011_280 Hb_007574_040 Hb_007574_040 Hb_000297_140--Hb_007574_040 Hb_000003_110 Hb_000003_110 Hb_005253_020--Hb_000003_110 Hb_002292_080 Hb_002292_080 Hb_005253_020--Hb_002292_080 Hb_012518_080 Hb_012518_080 Hb_005253_020--Hb_012518_080 Hb_000017_250 Hb_000017_250 Hb_005253_020--Hb_000017_250 Hb_000735_020 Hb_000735_020 Hb_005253_020--Hb_000735_020 Hb_000003_210 Hb_000003_210 Hb_005253_020--Hb_000003_210 Hb_000462_070 Hb_000462_070 Hb_002900_180--Hb_000462_070 Hb_002900_180--Hb_000003_110 Hb_002900_180--Hb_000260_110 Hb_000890_120 Hb_000890_120 Hb_002900_180--Hb_000890_120 Hb_002900_180--Hb_000017_250 Hb_000540_160 Hb_000540_160 Hb_002900_180--Hb_000540_160 Hb_002316_080 Hb_002316_080 Hb_010883_180--Hb_002316_080 Hb_010883_180--Hb_030565_100 Hb_010883_180--Hb_000260_110 Hb_103942_030 Hb_103942_030 Hb_010883_180--Hb_103942_030 Hb_000054_010 Hb_000054_010 Hb_010883_180--Hb_000054_010 Hb_000086_090 Hb_000086_090 Hb_010883_180--Hb_000086_090 Hb_000011_280--Hb_006002_050 Hb_000984_130 Hb_000984_130 Hb_000011_280--Hb_000984_130 Hb_001663_060 Hb_001663_060 Hb_000011_280--Hb_001663_060 Hb_000395_310 Hb_000395_310 Hb_000011_280--Hb_000395_310 Hb_000011_280--Hb_000997_080 Hb_006788_110 Hb_006788_110 Hb_000011_280--Hb_006788_110 Hb_002233_160 Hb_002233_160 Hb_000260_110--Hb_002233_160 Hb_000260_110--Hb_000011_280 Hb_000069_560 Hb_000069_560 Hb_000260_110--Hb_000069_560 Hb_000260_110--Hb_000462_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0410458 0.30081 1.00838 0 0.044391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0468809 0 0.0681413 0.103649 0.227286

CAGE analysis