Hb_008553_010

Information

Type -
Description -
Location Contig8553: 4540-6895
Sequence    

Annotation

kegg
ID cit:102607254
description probable LRR receptor-like serine/threonine-protein kinase At3g47570-like
nr
ID XP_012071397.1
description PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067KRV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05019 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase at3g47110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008553_010 0.0 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
2 Hb_175296_010 0.1643060776 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_000118_010 0.2056284841 desease resistance Gene Name: LRR_4 hypothetical protein POPTR_0021s00470g [Populus trichocarpa]
4 Hb_000101_360 0.2189293434 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
5 Hb_002498_040 0.2221376231 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
6 Hb_012553_020 0.2253760595 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
7 Hb_000010_200 0.225834823 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_001013_040 0.2258404304 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
9 Hb_000177_120 0.2261425995 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
10 Hb_008145_010 0.2269786939 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_004855_050 0.2282729772 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
12 Hb_004800_220 0.2310216196 - - PREDICTED: random slug protein 5 [Jatropha curcas]
13 Hb_059379_020 0.2316465963 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
14 Hb_001856_060 0.2317834876 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_004574_010 0.2334771401 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
16 Hb_007875_070 0.2345051753 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
17 Hb_002542_090 0.2369022903 - - Potassium transporter, putative [Ricinus communis]
18 Hb_009230_040 0.2391671236 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002269_030 0.2438157647 - - hypothetical protein CISIN_1g018400mg [Citrus sinensis]
20 Hb_002171_070 0.2443813277 desease resistance Gene Name: NB-ARC NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]

Gene co-expression network

sample Hb_008553_010 Hb_008553_010 Hb_175296_010 Hb_175296_010 Hb_008553_010--Hb_175296_010 Hb_000118_010 Hb_000118_010 Hb_008553_010--Hb_000118_010 Hb_000101_360 Hb_000101_360 Hb_008553_010--Hb_000101_360 Hb_002498_040 Hb_002498_040 Hb_008553_010--Hb_002498_040 Hb_012553_020 Hb_012553_020 Hb_008553_010--Hb_012553_020 Hb_000010_200 Hb_000010_200 Hb_008553_010--Hb_000010_200 Hb_029508_030 Hb_029508_030 Hb_175296_010--Hb_029508_030 Hb_004574_010 Hb_004574_010 Hb_175296_010--Hb_004574_010 Hb_000286_190 Hb_000286_190 Hb_175296_010--Hb_000286_190 Hb_000043_080 Hb_000043_080 Hb_175296_010--Hb_000043_080 Hb_001864_010 Hb_001864_010 Hb_175296_010--Hb_001864_010 Hb_000101_050 Hb_000101_050 Hb_000118_010--Hb_000101_050 Hb_005257_020 Hb_005257_020 Hb_000118_010--Hb_005257_020 Hb_000411_060 Hb_000411_060 Hb_000118_010--Hb_000411_060 Hb_002234_150 Hb_002234_150 Hb_000118_010--Hb_002234_150 Hb_001902_180 Hb_001902_180 Hb_000118_010--Hb_001902_180 Hb_183700_010 Hb_183700_010 Hb_000118_010--Hb_183700_010 Hb_008692_010 Hb_008692_010 Hb_000101_360--Hb_008692_010 Hb_002542_090 Hb_002542_090 Hb_000101_360--Hb_002542_090 Hb_000101_360--Hb_000010_200 Hb_025526_010 Hb_025526_010 Hb_000101_360--Hb_025526_010 Hb_002928_220 Hb_002928_220 Hb_000101_360--Hb_002928_220 Hb_007894_260 Hb_007894_260 Hb_000101_360--Hb_007894_260 Hb_008097_020 Hb_008097_020 Hb_002498_040--Hb_008097_020 Hb_059379_020 Hb_059379_020 Hb_002498_040--Hb_059379_020 Hb_008145_010 Hb_008145_010 Hb_002498_040--Hb_008145_010 Hb_002027_310 Hb_002027_310 Hb_002498_040--Hb_002027_310 Hb_009230_040 Hb_009230_040 Hb_002498_040--Hb_009230_040 Hb_004855_050 Hb_004855_050 Hb_002498_040--Hb_004855_050 Hb_001504_220 Hb_001504_220 Hb_012553_020--Hb_001504_220 Hb_012553_020--Hb_004855_050 Hb_011063_060 Hb_011063_060 Hb_012553_020--Hb_011063_060 Hb_000077_330 Hb_000077_330 Hb_012553_020--Hb_000077_330 Hb_008768_010 Hb_008768_010 Hb_012553_020--Hb_008768_010 Hb_000984_080 Hb_000984_080 Hb_012553_020--Hb_000984_080 Hb_002686_390 Hb_002686_390 Hb_000010_200--Hb_002686_390 Hb_000381_030 Hb_000381_030 Hb_000010_200--Hb_000381_030 Hb_001331_040 Hb_001331_040 Hb_000010_200--Hb_001331_040 Hb_004884_200 Hb_004884_200 Hb_000010_200--Hb_004884_200 Hb_006949_030 Hb_006949_030 Hb_000010_200--Hb_006949_030 Hb_000010_200--Hb_007894_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00908406 0.290832 0.0883005 0.0128562 0.0357905 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0925587 0.793923 0.0687818

CAGE analysis