Hb_175296_010

Information

Type -
Description -
Location Contig175296: 670-4600
Sequence    

Annotation

kegg
ID cit:102607254
description probable LRR receptor-like serine/threonine-protein kinase At3g47570-like
nr
ID XP_012071397.1
description PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067KRV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05019 PE=3 SV=1
Gene Ontology
ID GO:0016020
description receptor-like protein kinase at3g47110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175296_010 0.0 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
2 Hb_029508_030 0.1591057536 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
3 Hb_004574_010 0.1625843616 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
4 Hb_008553_010 0.1643060776 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
5 Hb_000286_190 0.1649309444 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
6 Hb_000043_080 0.167859537 - - lipid binding protein, putative [Ricinus communis]
7 Hb_001864_010 0.1691498057 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000177_120 0.1727672661 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
9 Hb_003677_010 0.1757794878 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
10 Hb_000556_200 0.1774662544 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
11 Hb_003086_200 0.180671906 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_002007_230 0.1823690352 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
13 Hb_000221_170 0.1831148601 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
14 Hb_005797_030 0.188318005 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
15 Hb_003031_030 0.1883915905 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
16 Hb_008503_020 0.1884010806 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_001709_070 0.1894951658 - - carbohydrate binding protein, putative [Ricinus communis]
18 Hb_001489_030 0.189634892 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
19 Hb_000684_020 0.1902259968 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_001252_040 0.1902671643 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]

Gene co-expression network

sample Hb_175296_010 Hb_175296_010 Hb_029508_030 Hb_029508_030 Hb_175296_010--Hb_029508_030 Hb_004574_010 Hb_004574_010 Hb_175296_010--Hb_004574_010 Hb_008553_010 Hb_008553_010 Hb_175296_010--Hb_008553_010 Hb_000286_190 Hb_000286_190 Hb_175296_010--Hb_000286_190 Hb_000043_080 Hb_000043_080 Hb_175296_010--Hb_000043_080 Hb_001864_010 Hb_001864_010 Hb_175296_010--Hb_001864_010 Hb_029508_030--Hb_000286_190 Hb_000221_170 Hb_000221_170 Hb_029508_030--Hb_000221_170 Hb_000920_360 Hb_000920_360 Hb_029508_030--Hb_000920_360 Hb_029508_030--Hb_001864_010 Hb_001709_070 Hb_001709_070 Hb_029508_030--Hb_001709_070 Hb_000876_050 Hb_000876_050 Hb_029508_030--Hb_000876_050 Hb_001838_050 Hb_001838_050 Hb_004574_010--Hb_001838_050 Hb_003031_030 Hb_003031_030 Hb_004574_010--Hb_003031_030 Hb_012395_070 Hb_012395_070 Hb_004574_010--Hb_012395_070 Hb_002805_150 Hb_002805_150 Hb_004574_010--Hb_002805_150 Hb_004574_010--Hb_000286_190 Hb_088916_010 Hb_088916_010 Hb_004574_010--Hb_088916_010 Hb_000118_010 Hb_000118_010 Hb_008553_010--Hb_000118_010 Hb_000101_360 Hb_000101_360 Hb_008553_010--Hb_000101_360 Hb_002498_040 Hb_002498_040 Hb_008553_010--Hb_002498_040 Hb_012553_020 Hb_012553_020 Hb_008553_010--Hb_012553_020 Hb_000010_200 Hb_000010_200 Hb_008553_010--Hb_000010_200 Hb_000286_190--Hb_000920_360 Hb_005797_030 Hb_005797_030 Hb_000286_190--Hb_005797_030 Hb_000286_190--Hb_001864_010 Hb_000608_450 Hb_000608_450 Hb_000286_190--Hb_000608_450 Hb_001489_030 Hb_001489_030 Hb_000043_080--Hb_001489_030 Hb_003086_200 Hb_003086_200 Hb_000043_080--Hb_003086_200 Hb_000556_200 Hb_000556_200 Hb_000043_080--Hb_000556_200 Hb_000043_080--Hb_012395_070 Hb_002007_230 Hb_002007_230 Hb_000043_080--Hb_002007_230 Hb_000265_010 Hb_000265_010 Hb_000043_080--Hb_000265_010 Hb_001864_010--Hb_005797_030 Hb_001864_010--Hb_002007_230 Hb_001864_010--Hb_000221_170 Hb_008503_020 Hb_008503_020 Hb_001864_010--Hb_008503_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.243596 6.17918 0.372423 0.338584 0.354386 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0258355 0 0.460939 11.1821 1.19824

CAGE analysis