Hb_007166_030

Information

Type -
Description -
Location Contig7166: 43257-55947
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55489: 32822-92847 , PASA_asmbl_55491: 50041-50269 , PASA_asmbl_55493: 49697-49996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007166_030 0.0 - - -
2 Hb_011232_010 0.2600969031 - - Leucine-rich repeat receptor-like protein kinase family protein [Theobroma cacao]
3 Hb_002995_030 0.262826333 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000915_220 0.2655916267 - - Lactoylglutathione lyase / glyoxalase I family protein [Theobroma cacao]
5 Hb_004570_040 0.2667075301 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_007590_040 0.2776187357 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
7 Hb_002571_050 0.2814523203 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
8 Hb_005545_080 0.2826495908 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
9 Hb_002221_020 0.2863580021 - - hypothetical protein B456_008G083700 [Gossypium raimondii]
10 Hb_000522_020 0.2867564522 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
11 Hb_000243_310 0.288112064 - - lactoylglutathione lyase, putative [Ricinus communis]
12 Hb_067034_010 0.288508229 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
13 Hb_006052_050 0.2917859431 - - hypothetical protein EUGRSUZ_A00568 [Eucalyptus grandis]
14 Hb_006040_080 0.2934162225 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000307_110 0.2961506811 - - hypothetical protein JCGZ_08160 [Jatropha curcas]
16 Hb_005725_190 0.296332491 - - hypothetical protein JCGZ_15992 [Jatropha curcas]
17 Hb_000117_110 0.2994278561 - - transferase, putative [Ricinus communis]
18 Hb_002498_150 0.301274952 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003086_050 0.3026403682 - - calcium-dependent protein kinase, putative [Ricinus communis]
20 Hb_010327_010 0.3034170446 - - calcium ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007166_030 Hb_007166_030 Hb_011232_010 Hb_011232_010 Hb_007166_030--Hb_011232_010 Hb_002995_030 Hb_002995_030 Hb_007166_030--Hb_002995_030 Hb_000915_220 Hb_000915_220 Hb_007166_030--Hb_000915_220 Hb_004570_040 Hb_004570_040 Hb_007166_030--Hb_004570_040 Hb_007590_040 Hb_007590_040 Hb_007166_030--Hb_007590_040 Hb_002571_050 Hb_002571_050 Hb_007166_030--Hb_002571_050 Hb_008078_020 Hb_008078_020 Hb_011232_010--Hb_008078_020 Hb_011232_010--Hb_004570_040 Hb_171900_030 Hb_171900_030 Hb_011232_010--Hb_171900_030 Hb_006873_030 Hb_006873_030 Hb_011232_010--Hb_006873_030 Hb_005545_080 Hb_005545_080 Hb_011232_010--Hb_005545_080 Hb_002097_120 Hb_002097_120 Hb_011232_010--Hb_002097_120 Hb_006052_050 Hb_006052_050 Hb_002995_030--Hb_006052_050 Hb_126103_010 Hb_126103_010 Hb_002995_030--Hb_126103_010 Hb_001227_040 Hb_001227_040 Hb_002995_030--Hb_001227_040 Hb_000333_120 Hb_000333_120 Hb_002995_030--Hb_000333_120 Hb_010620_020 Hb_010620_020 Hb_002995_030--Hb_010620_020 Hb_000815_150 Hb_000815_150 Hb_002995_030--Hb_000815_150 Hb_002221_020 Hb_002221_020 Hb_000915_220--Hb_002221_020 Hb_000915_220--Hb_007590_040 Hb_067034_010 Hb_067034_010 Hb_000915_220--Hb_067034_010 Hb_000915_220--Hb_002571_050 Hb_001850_010 Hb_001850_010 Hb_000915_220--Hb_001850_010 Hb_000915_220--Hb_006052_050 Hb_185080_010 Hb_185080_010 Hb_004570_040--Hb_185080_010 Hb_003375_080 Hb_003375_080 Hb_004570_040--Hb_003375_080 Hb_000307_110 Hb_000307_110 Hb_004570_040--Hb_000307_110 Hb_000397_090 Hb_000397_090 Hb_004570_040--Hb_000397_090 Hb_004570_040--Hb_005545_080 Hb_000434_050 Hb_000434_050 Hb_004570_040--Hb_000434_050 Hb_000522_020 Hb_000522_020 Hb_007590_040--Hb_000522_020 Hb_000501_180 Hb_000501_180 Hb_007590_040--Hb_000501_180 Hb_007590_040--Hb_002221_020 Hb_007590_040--Hb_001850_010 Hb_015473_020 Hb_015473_020 Hb_007590_040--Hb_015473_020 Hb_002571_050--Hb_002221_020 Hb_001899_040 Hb_001899_040 Hb_002571_050--Hb_001899_040 Hb_000002_280 Hb_000002_280 Hb_002571_050--Hb_000002_280 Hb_005081_090 Hb_005081_090 Hb_002571_050--Hb_005081_090 Hb_000300_240 Hb_000300_240 Hb_002571_050--Hb_000300_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0155965 0.155654 0.0057776 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0139272 0 0.0110612 0.0296029

CAGE analysis