Hb_005273_030

Information

Type -
Description -
Location Contig5273: 25891-29647
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012072750.1
description PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067KN28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07835 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005273_030 0.0 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
2 Hb_001217_050 0.1128720704 - - actin binding protein, putative [Ricinus communis]
3 Hb_002007_160 0.1173075645 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
4 Hb_029142_050 0.1176444998 desease resistance Gene Name: PPR PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
5 Hb_000392_150 0.1178148168 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
6 Hb_001628_070 0.1216486341 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000046_580 0.1225097281 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
8 Hb_013358_010 0.1229042424 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
9 Hb_004705_020 0.1236681985 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
10 Hb_000215_140 0.1237626174 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
11 Hb_010222_070 0.126223319 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
12 Hb_000003_550 0.1269571237 - - -
13 Hb_000866_120 0.1275379682 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
14 Hb_000015_050 0.1283617367 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
15 Hb_000317_370 0.1302417377 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
16 Hb_012490_090 0.1303342881 - - PREDICTED: myosin-17 [Jatropha curcas]
17 Hb_002235_040 0.1306063488 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
18 Hb_000172_110 0.1326242002 - - -
19 Hb_002780_010 0.1330189188 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
20 Hb_000599_190 0.1332782523 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]

Gene co-expression network

sample Hb_005273_030 Hb_005273_030 Hb_001217_050 Hb_001217_050 Hb_005273_030--Hb_001217_050 Hb_002007_160 Hb_002007_160 Hb_005273_030--Hb_002007_160 Hb_029142_050 Hb_029142_050 Hb_005273_030--Hb_029142_050 Hb_000392_150 Hb_000392_150 Hb_005273_030--Hb_000392_150 Hb_001628_070 Hb_001628_070 Hb_005273_030--Hb_001628_070 Hb_000046_580 Hb_000046_580 Hb_005273_030--Hb_000046_580 Hb_000107_490 Hb_000107_490 Hb_001217_050--Hb_000107_490 Hb_000313_120 Hb_000313_120 Hb_001217_050--Hb_000313_120 Hb_010222_070 Hb_010222_070 Hb_001217_050--Hb_010222_070 Hb_000245_040 Hb_000245_040 Hb_001217_050--Hb_000245_040 Hb_004030_080 Hb_004030_080 Hb_001217_050--Hb_004030_080 Hb_000599_190 Hb_000599_190 Hb_001217_050--Hb_000599_190 Hb_000866_120 Hb_000866_120 Hb_002007_160--Hb_000866_120 Hb_002007_160--Hb_000599_190 Hb_002007_160--Hb_029142_050 Hb_002780_010 Hb_002780_010 Hb_002007_160--Hb_002780_010 Hb_002007_160--Hb_010222_070 Hb_002798_070 Hb_002798_070 Hb_002007_160--Hb_002798_070 Hb_001268_380 Hb_001268_380 Hb_029142_050--Hb_001268_380 Hb_029142_050--Hb_000392_150 Hb_029142_050--Hb_000866_120 Hb_029142_050--Hb_000046_580 Hb_000003_550 Hb_000003_550 Hb_029142_050--Hb_000003_550 Hb_000392_150--Hb_000866_120 Hb_000976_210 Hb_000976_210 Hb_000392_150--Hb_000976_210 Hb_000392_150--Hb_002798_070 Hb_000392_150--Hb_002007_160 Hb_000330_040 Hb_000330_040 Hb_000392_150--Hb_000330_040 Hb_004705_020 Hb_004705_020 Hb_001628_070--Hb_004705_020 Hb_006531_020 Hb_006531_020 Hb_001628_070--Hb_006531_020 Hb_004586_290 Hb_004586_290 Hb_001628_070--Hb_004586_290 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_000024_040 Hb_000024_040 Hb_001628_070--Hb_000024_040 Hb_000412_010 Hb_000412_010 Hb_001628_070--Hb_000412_010 Hb_005486_030 Hb_005486_030 Hb_000046_580--Hb_005486_030 Hb_000130_490 Hb_000130_490 Hb_000046_580--Hb_000130_490 Hb_000005_070 Hb_000005_070 Hb_000046_580--Hb_000005_070 Hb_000015_050 Hb_000015_050 Hb_000046_580--Hb_000015_050 Hb_000046_580--Hb_002780_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.326357 0.849746 0.154943 0.322856 0.517008 0.177396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297633 0.267646 0.667089 0.678482 0.495693

CAGE analysis