Hb_004542_010

Information

Type -
Description -
Location Contig4542: 2103-2575
Sequence    

Annotation

kegg
ID mtr:MTR_1g041530
description Putative chloroplast RF19
nr
ID XP_003589917.1
description Putative chloroplast RF19 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID A2Q585
description Hypothetical 214.8 kDa protein ycf1, putative OS=Medicago truncatula GN=MtrDRAFT_AC160516g54v2 PE=4 SV=1
Gene Ontology
ID GO:0009507
description hypothetical chloroplast rf1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004542_010 0.0 - - Putative chloroplast RF19 [Medicago truncatula]
2 Hb_000207_140 0.1838253559 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
3 Hb_027654_070 0.1935295734 - - conserved hypothetical protein [Ricinus communis]
4 Hb_185494_010 0.1943264924 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_000500_330 0.202299918 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
6 Hb_165330_010 0.2064289606 - - BnaUnng00840D [Brassica napus]
7 Hb_004109_250 0.2171252985 - - unknown [Populus trichocarpa x Populus deltoides]
8 Hb_188739_010 0.2182492079 - - protein binding protein, putative [Ricinus communis]
9 Hb_002540_060 0.2209582073 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
10 Hb_000816_210 0.2210169297 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
11 Hb_000574_380 0.2228361508 - - hydrolase, putative [Ricinus communis]
12 Hb_028487_120 0.2229406918 - - PREDICTED: HMG-Y-related protein B-like [Jatropha curcas]
13 Hb_005197_030 0.2241506012 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH71-like isoform X2 [Populus euphratica]
14 Hb_002435_090 0.2256049669 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
15 Hb_000431_090 0.2261353391 - - hypothetical protein POPTR_0017s14020g [Populus trichocarpa]
16 Hb_001343_120 0.2325455183 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003077_010 0.2354773436 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000028_150 0.2385091428 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
19 Hb_002817_010 0.239892579 - - PREDICTED: uncharacterized protein LOC105630103 isoform X2 [Jatropha curcas]
20 Hb_002603_090 0.2401445527 - - PREDICTED: GDSL esterase/lipase CPRD49-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_004542_010 Hb_004542_010 Hb_000207_140 Hb_000207_140 Hb_004542_010--Hb_000207_140 Hb_027654_070 Hb_027654_070 Hb_004542_010--Hb_027654_070 Hb_185494_010 Hb_185494_010 Hb_004542_010--Hb_185494_010 Hb_000500_330 Hb_000500_330 Hb_004542_010--Hb_000500_330 Hb_165330_010 Hb_165330_010 Hb_004542_010--Hb_165330_010 Hb_004109_250 Hb_004109_250 Hb_004542_010--Hb_004109_250 Hb_002435_090 Hb_002435_090 Hb_000207_140--Hb_002435_090 Hb_188739_010 Hb_188739_010 Hb_000207_140--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_000207_140--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_000207_140--Hb_003992_050 Hb_000816_210 Hb_000816_210 Hb_000207_140--Hb_000816_210 Hb_001975_050 Hb_001975_050 Hb_000207_140--Hb_001975_050 Hb_027654_070--Hb_001975_050 Hb_027654_070--Hb_003992_050 Hb_027654_070--Hb_001343_120 Hb_027654_070--Hb_000207_140 Hb_002540_060 Hb_002540_060 Hb_027654_070--Hb_002540_060 Hb_027654_070--Hb_002435_090 Hb_002443_010 Hb_002443_010 Hb_185494_010--Hb_002443_010 Hb_185494_010--Hb_002540_060 Hb_000574_380 Hb_000574_380 Hb_185494_010--Hb_000574_380 Hb_005197_030 Hb_005197_030 Hb_185494_010--Hb_005197_030 Hb_003541_010 Hb_003541_010 Hb_185494_010--Hb_003541_010 Hb_000347_170 Hb_000347_170 Hb_185494_010--Hb_000347_170 Hb_000110_240 Hb_000110_240 Hb_000500_330--Hb_000110_240 Hb_000494_010 Hb_000494_010 Hb_000500_330--Hb_000494_010 Hb_004846_230 Hb_004846_230 Hb_000500_330--Hb_004846_230 Hb_000028_150 Hb_000028_150 Hb_000500_330--Hb_000028_150 Hb_005116_130 Hb_005116_130 Hb_000500_330--Hb_005116_130 Hb_046590_010 Hb_046590_010 Hb_000500_330--Hb_046590_010 Hb_003077_010 Hb_003077_010 Hb_165330_010--Hb_003077_010 Hb_028872_130 Hb_028872_130 Hb_165330_010--Hb_028872_130 Hb_062773_010 Hb_062773_010 Hb_165330_010--Hb_062773_010 Hb_165330_010--Hb_000574_380 Hb_002121_030 Hb_002121_030 Hb_165330_010--Hb_002121_030 Hb_000431_080 Hb_000431_080 Hb_165330_010--Hb_000431_080 Hb_004109_250--Hb_003077_010 Hb_004109_250--Hb_000494_010 Hb_000349_170 Hb_000349_170 Hb_004109_250--Hb_000349_170 Hb_004109_250--Hb_000110_240 Hb_004109_250--Hb_000500_330 Hb_000388_040 Hb_000388_040 Hb_004109_250--Hb_000388_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.032 1.60271 54.5943 1.75011 2.0588 3.84354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.5115 0.535682 0 0.226324 8.45756

CAGE analysis