Hb_004024_020

Information

Type -
Description -
Location Contig4024: 33561-51559
Sequence    

Annotation

kegg
ID rcu:RCOM_0446110
description ankyrin repeat-containing protein, putative
nr
ID XP_002533395.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID B9T576
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0446110 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at5g02620-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39953: 48012-48371 , PASA_asmbl_39954: 50018-51543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004024_020 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_019613_010 0.1844460337 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000879_230 0.2005169217 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
4 Hb_001307_110 0.2088019094 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
5 Hb_000445_120 0.2093887063 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001269_070 0.2098891736 - - double-stranded RNA binding protein, putative [Ricinus communis]
7 Hb_001098_030 0.215509139 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Populus euphratica]
8 Hb_001294_030 0.2210977768 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
9 Hb_007558_130 0.2278855337 - - -
10 Hb_000438_120 0.2280489052 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_000723_290 0.2323150212 - - calcium lipid binding protein, putative [Ricinus communis]
12 Hb_000329_580 0.2339258615 - - malate dehydrogenase, putative [Ricinus communis]
13 Hb_000032_140 0.2340570714 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003935_080 0.2351135546 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
15 Hb_000264_040 0.2381041598 - - sugar transporter, putative [Ricinus communis]
16 Hb_002886_010 0.2392250636 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002968_050 0.2402129331 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_000176_010 0.2404940001 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
19 Hb_004109_160 0.2414984214 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
20 Hb_000365_370 0.2439734267 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004024_020 Hb_004024_020 Hb_019613_010 Hb_019613_010 Hb_004024_020--Hb_019613_010 Hb_000879_230 Hb_000879_230 Hb_004024_020--Hb_000879_230 Hb_001307_110 Hb_001307_110 Hb_004024_020--Hb_001307_110 Hb_000445_120 Hb_000445_120 Hb_004024_020--Hb_000445_120 Hb_001269_070 Hb_001269_070 Hb_004024_020--Hb_001269_070 Hb_001098_030 Hb_001098_030 Hb_004024_020--Hb_001098_030 Hb_019613_010--Hb_001269_070 Hb_000329_580 Hb_000329_580 Hb_019613_010--Hb_000329_580 Hb_011053_020 Hb_011053_020 Hb_019613_010--Hb_011053_020 Hb_001294_030 Hb_001294_030 Hb_019613_010--Hb_001294_030 Hb_000473_060 Hb_000473_060 Hb_019613_010--Hb_000473_060 Hb_031330_020 Hb_031330_020 Hb_019613_010--Hb_031330_020 Hb_000176_010 Hb_000176_010 Hb_000879_230--Hb_000176_010 Hb_009780_050 Hb_009780_050 Hb_000879_230--Hb_009780_050 Hb_027298_010 Hb_027298_010 Hb_000879_230--Hb_027298_010 Hb_000879_230--Hb_001307_110 Hb_003181_060 Hb_003181_060 Hb_000879_230--Hb_003181_060 Hb_001450_030 Hb_001450_030 Hb_000879_230--Hb_001450_030 Hb_065525_120 Hb_065525_120 Hb_001307_110--Hb_065525_120 Hb_002320_080 Hb_002320_080 Hb_001307_110--Hb_002320_080 Hb_001307_110--Hb_009780_050 Hb_000365_370 Hb_000365_370 Hb_001307_110--Hb_000365_370 Hb_000032_370 Hb_000032_370 Hb_001307_110--Hb_000032_370 Hb_000264_040 Hb_000264_040 Hb_000445_120--Hb_000264_040 Hb_002886_010 Hb_002886_010 Hb_000445_120--Hb_002886_010 Hb_000189_440 Hb_000189_440 Hb_000445_120--Hb_000189_440 Hb_000805_010 Hb_000805_010 Hb_000445_120--Hb_000805_010 Hb_000649_040 Hb_000649_040 Hb_000445_120--Hb_000649_040 Hb_002759_050 Hb_002759_050 Hb_000445_120--Hb_002759_050 Hb_008179_010 Hb_008179_010 Hb_001269_070--Hb_008179_010 Hb_003935_080 Hb_003935_080 Hb_001269_070--Hb_003935_080 Hb_000032_140 Hb_000032_140 Hb_001269_070--Hb_000032_140 Hb_000395_010 Hb_000395_010 Hb_001269_070--Hb_000395_010 Hb_003226_200 Hb_003226_200 Hb_001269_070--Hb_003226_200 Hb_002486_020 Hb_002486_020 Hb_001269_070--Hb_002486_020 Hb_004648_110 Hb_004648_110 Hb_001098_030--Hb_004648_110 Hb_006836_030 Hb_006836_030 Hb_001098_030--Hb_006836_030 Hb_001975_040 Hb_001975_040 Hb_001098_030--Hb_001975_040 Hb_001098_030--Hb_003181_060 Hb_002603_110 Hb_002603_110 Hb_001098_030--Hb_002603_110 Hb_012239_050 Hb_012239_050 Hb_001098_030--Hb_012239_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0188773 0.238925 0.491285 0.00670089 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.081218 0.396247 0.122026 0.0304385 0.707612

CAGE analysis