Hb_003097_070

Information

Type -
Description -
Location Contig3097: 53211-55811
Sequence    

Annotation

kegg
ID rcu:RCOM_1454030
description glucose regulated repressor protein, putative
nr
ID XP_002513122.1
description glucose regulated repressor protein, putative [Ricinus communis]
swissprot
ID Q9C5D2
description F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1
trembl
ID B9RGH0
description Glucose regulated repressor protein, putative OS=Ricinus communis GN=RCOM_1454030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32717: 54656-55538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_070 0.0 - - glucose regulated repressor protein, putative [Ricinus communis]
2 Hb_000161_040 0.0733070445 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
3 Hb_002728_080 0.1048532327 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_012651_010 0.1101612182 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
5 Hb_000140_350 0.1112413224 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010534_010 0.1144471582 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
7 Hb_033286_010 0.115443195 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
8 Hb_001189_090 0.1160342472 - - carbon catabolite repressor protein, putative [Ricinus communis]
9 Hb_023313_030 0.1184405185 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004627_040 0.1193127587 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
11 Hb_005504_050 0.1194034124 - - putative protein [Arabidopsis thaliana]
12 Hb_000139_530 0.122272085 - - conserved hypothetical protein [Ricinus communis]
13 Hb_058620_070 0.1243109879 - - unnamed protein product [Chondrus crispus]
14 Hb_001882_050 0.1272152533 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
15 Hb_005797_010 0.1272287568 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
16 Hb_030736_020 0.127786266 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012518_070 0.1279020865 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
18 Hb_007481_010 0.1279603053 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
19 Hb_000146_040 0.1282103122 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
20 Hb_003086_170 0.1286325462 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]

Gene co-expression network

sample Hb_003097_070 Hb_003097_070 Hb_000161_040 Hb_000161_040 Hb_003097_070--Hb_000161_040 Hb_002728_080 Hb_002728_080 Hb_003097_070--Hb_002728_080 Hb_012651_010 Hb_012651_010 Hb_003097_070--Hb_012651_010 Hb_000140_350 Hb_000140_350 Hb_003097_070--Hb_000140_350 Hb_010534_010 Hb_010534_010 Hb_003097_070--Hb_010534_010 Hb_033286_010 Hb_033286_010 Hb_003097_070--Hb_033286_010 Hb_000161_040--Hb_002728_080 Hb_000116_450 Hb_000116_450 Hb_000161_040--Hb_000116_450 Hb_000161_040--Hb_033286_010 Hb_023313_030 Hb_023313_030 Hb_000161_040--Hb_023313_030 Hb_000258_070 Hb_000258_070 Hb_000161_040--Hb_000258_070 Hb_002989_020 Hb_002989_020 Hb_002728_080--Hb_002989_020 Hb_007481_010 Hb_007481_010 Hb_002728_080--Hb_007481_010 Hb_005797_010 Hb_005797_010 Hb_002728_080--Hb_005797_010 Hb_003683_020 Hb_003683_020 Hb_002728_080--Hb_003683_020 Hb_004990_010 Hb_004990_010 Hb_002728_080--Hb_004990_010 Hb_000046_500 Hb_000046_500 Hb_002728_080--Hb_000046_500 Hb_001946_180 Hb_001946_180 Hb_012651_010--Hb_001946_180 Hb_000002_480 Hb_000002_480 Hb_012651_010--Hb_000002_480 Hb_000890_230 Hb_000890_230 Hb_012651_010--Hb_000890_230 Hb_000429_050 Hb_000429_050 Hb_012651_010--Hb_000429_050 Hb_012651_010--Hb_000140_350 Hb_000984_310 Hb_000984_310 Hb_012651_010--Hb_000984_310 Hb_000146_040 Hb_000146_040 Hb_000140_350--Hb_000146_040 Hb_000836_280 Hb_000836_280 Hb_000140_350--Hb_000836_280 Hb_000208_280 Hb_000208_280 Hb_000140_350--Hb_000208_280 Hb_004102_170 Hb_004102_170 Hb_000140_350--Hb_004102_170 Hb_000130_180 Hb_000130_180 Hb_000140_350--Hb_000130_180 Hb_000477_100 Hb_000477_100 Hb_000140_350--Hb_000477_100 Hb_010534_010--Hb_000161_040 Hb_000086_170 Hb_000086_170 Hb_010534_010--Hb_000086_170 Hb_135831_010 Hb_135831_010 Hb_010534_010--Hb_135831_010 Hb_084247_010 Hb_084247_010 Hb_010534_010--Hb_084247_010 Hb_021419_030 Hb_021419_030 Hb_010534_010--Hb_021419_030 Hb_033286_010--Hb_000146_040 Hb_003671_010 Hb_003671_010 Hb_033286_010--Hb_003671_010 Hb_001009_320 Hb_001009_320 Hb_033286_010--Hb_001009_320 Hb_005946_210 Hb_005946_210 Hb_033286_010--Hb_005946_210 Hb_000522_170 Hb_000522_170 Hb_033286_010--Hb_000522_170 Hb_000006_010 Hb_000006_010 Hb_033286_010--Hb_000006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45242 2.00449 1.6454 5.01671 3.60355 1.16058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94699 2.0523 1.99783 2.0847 2.0324

CAGE analysis