Hb_003010_010

Information

Type -
Description -
Location Contig3010: 5126-7150
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03360g
description hypothetical protein
nr
ID XP_012071693.1
description PREDICTED: uncharacterized protein LOC105633673 [Jatropha curcas]
swissprot
ID P06237
description Nodulation protein H OS=Rhizobium meliloti GN=nodH PE=4 SV=1
trembl
ID B9MVL2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s03360g PE=4 SV=1
Gene Ontology
ID GO:0008146
description nodulation h

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31704: 5543-5987 , PASA_asmbl_31705: 7921-10911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003010_010 0.0 - - PREDICTED: uncharacterized protein LOC105633673 [Jatropha curcas]
2 Hb_036176_010 0.1951360115 - - hypothetical protein CISIN_1g002055mg [Citrus sinensis]
3 Hb_011457_130 0.2016930176 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
4 Hb_005081_030 0.2023508187 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
5 Hb_007044_220 0.2111622297 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
6 Hb_005694_180 0.2148351538 - - PREDICTED: cytochrome b5 [Jatropha curcas]
7 Hb_000051_030 0.2162174176 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
8 Hb_028001_020 0.2173640562 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
9 Hb_030944_010 0.2185654316 - - PREDICTED: uncharacterized protein LOC105633455 [Jatropha curcas]
10 Hb_000062_490 0.220091085 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
11 Hb_000002_360 0.2216343078 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
12 Hb_001856_170 0.2254103254 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
13 Hb_032208_050 0.2269914181 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
14 Hb_000007_380 0.2270750494 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
15 Hb_000953_080 0.2270879902 - - PREDICTED: PAN domain-containing protein At5g03700 [Jatropha curcas]
16 Hb_000692_030 0.2286147559 - - nucleoredoxin, putative [Ricinus communis]
17 Hb_001022_050 0.229281174 - - hypothetical protein POPTR_0016s07780g [Populus trichocarpa]
18 Hb_019863_030 0.2313062157 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
19 Hb_001898_060 0.2331180388 - - conserved hypothetical protein [Ricinus communis]
20 Hb_042083_060 0.2344978707 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]

Gene co-expression network

sample Hb_003010_010 Hb_003010_010 Hb_036176_010 Hb_036176_010 Hb_003010_010--Hb_036176_010 Hb_011457_130 Hb_011457_130 Hb_003010_010--Hb_011457_130 Hb_005081_030 Hb_005081_030 Hb_003010_010--Hb_005081_030 Hb_007044_220 Hb_007044_220 Hb_003010_010--Hb_007044_220 Hb_005694_180 Hb_005694_180 Hb_003010_010--Hb_005694_180 Hb_000051_030 Hb_000051_030 Hb_003010_010--Hb_000051_030 Hb_042491_010 Hb_042491_010 Hb_036176_010--Hb_042491_010 Hb_011206_050 Hb_011206_050 Hb_036176_010--Hb_011206_050 Hb_002044_110 Hb_002044_110 Hb_036176_010--Hb_002044_110 Hb_000189_070 Hb_000189_070 Hb_036176_010--Hb_000189_070 Hb_002217_210 Hb_002217_210 Hb_036176_010--Hb_002217_210 Hb_005144_100 Hb_005144_100 Hb_036176_010--Hb_005144_100 Hb_011457_130--Hb_005694_180 Hb_003430_080 Hb_003430_080 Hb_011457_130--Hb_003430_080 Hb_000740_090 Hb_000740_090 Hb_011457_130--Hb_000740_090 Hb_001053_210 Hb_001053_210 Hb_011457_130--Hb_001053_210 Hb_000940_210 Hb_000940_210 Hb_011457_130--Hb_000940_210 Hb_000003_030 Hb_000003_030 Hb_011457_130--Hb_000003_030 Hb_005081_030--Hb_036176_010 Hb_005081_030--Hb_011206_050 Hb_005081_030--Hb_002044_110 Hb_183820_010 Hb_183820_010 Hb_005081_030--Hb_183820_010 Hb_003442_010 Hb_003442_010 Hb_005081_030--Hb_003442_010 Hb_003875_040 Hb_003875_040 Hb_007044_220--Hb_003875_040 Hb_127416_010 Hb_127416_010 Hb_007044_220--Hb_127416_010 Hb_000028_490 Hb_000028_490 Hb_007044_220--Hb_000028_490 Hb_005839_030 Hb_005839_030 Hb_007044_220--Hb_005839_030 Hb_183086_070 Hb_183086_070 Hb_007044_220--Hb_183086_070 Hb_002592_050 Hb_002592_050 Hb_007044_220--Hb_002592_050 Hb_005694_180--Hb_003430_080 Hb_034507_060 Hb_034507_060 Hb_005694_180--Hb_034507_060 Hb_023226_030 Hb_023226_030 Hb_005694_180--Hb_023226_030 Hb_001195_420 Hb_001195_420 Hb_005694_180--Hb_001195_420 Hb_000309_030 Hb_000309_030 Hb_005694_180--Hb_000309_030 Hb_012760_090 Hb_012760_090 Hb_005694_180--Hb_012760_090 Hb_000347_020 Hb_000347_020 Hb_000051_030--Hb_000347_020 Hb_004286_030 Hb_004286_030 Hb_000051_030--Hb_004286_030 Hb_029622_020 Hb_029622_020 Hb_000051_030--Hb_029622_020 Hb_068492_010 Hb_068492_010 Hb_000051_030--Hb_068492_010 Hb_002662_090 Hb_002662_090 Hb_000051_030--Hb_002662_090 Hb_001318_110 Hb_001318_110 Hb_000051_030--Hb_001318_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0709419 0.544695 0.563347 0.990372 0 0.129008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0927996 0.0729912 0.0674765 0.717971 0

CAGE analysis