Hb_005081_030

Information

Type -
Description -
Location Contig5081: 15565-16860
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09200g
description POPTRDRAFT_578510; hypothetical protein
nr
ID XP_002325015.2
description hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
swissprot
ID Q5XF85
description E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2
trembl
ID B9ILR6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s09200g PE=4 SV=2
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase atl42-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46193: 16517-16856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005081_030 0.0 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
2 Hb_036176_010 0.1899236346 - - hypothetical protein CISIN_1g002055mg [Citrus sinensis]
3 Hb_011206_050 0.1908071714 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
4 Hb_003010_010 0.2023508187 - - PREDICTED: uncharacterized protein LOC105633673 [Jatropha curcas]
5 Hb_002044_110 0.2099338472 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
6 Hb_183820_010 0.212786989 - - Disease resistance protein RFL1, putative [Ricinus communis]
7 Hb_003442_010 0.2149626168 - - PREDICTED: structural maintenance of chromosomes protein 4-like isoform X2 [Citrus sinensis]
8 Hb_005237_070 0.2164166989 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
9 Hb_001277_420 0.2205687164 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
10 Hb_106728_020 0.2222760019 - - cytochrome P450, putative [Ricinus communis]
11 Hb_028001_020 0.2252590084 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
12 Hb_005144_100 0.2260294026 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
13 Hb_000189_070 0.2285265379 transcription factor TF Family: AUX/IAA Auxin-induced protein 22D, putative [Ricinus communis]
14 Hb_002289_110 0.2287630715 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
15 Hb_000566_170 0.2292611318 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
16 Hb_001898_060 0.2297599519 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004635_040 0.2306506995 - - Polyprotein, putative [Solanum demissum]
18 Hb_012727_010 0.2307155947 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
19 Hb_000181_450 0.2316581802 - - hypothetical protein JCGZ_20984 [Jatropha curcas]
20 Hb_110854_010 0.2322571414 - - -

Gene co-expression network

sample Hb_005081_030 Hb_005081_030 Hb_036176_010 Hb_036176_010 Hb_005081_030--Hb_036176_010 Hb_011206_050 Hb_011206_050 Hb_005081_030--Hb_011206_050 Hb_003010_010 Hb_003010_010 Hb_005081_030--Hb_003010_010 Hb_002044_110 Hb_002044_110 Hb_005081_030--Hb_002044_110 Hb_183820_010 Hb_183820_010 Hb_005081_030--Hb_183820_010 Hb_003442_010 Hb_003442_010 Hb_005081_030--Hb_003442_010 Hb_042491_010 Hb_042491_010 Hb_036176_010--Hb_042491_010 Hb_036176_010--Hb_011206_050 Hb_036176_010--Hb_002044_110 Hb_000189_070 Hb_000189_070 Hb_036176_010--Hb_000189_070 Hb_002217_210 Hb_002217_210 Hb_036176_010--Hb_002217_210 Hb_005144_100 Hb_005144_100 Hb_036176_010--Hb_005144_100 Hb_000566_170 Hb_000566_170 Hb_011206_050--Hb_000566_170 Hb_011206_050--Hb_002044_110 Hb_000510_210 Hb_000510_210 Hb_011206_050--Hb_000510_210 Hb_004218_220 Hb_004218_220 Hb_011206_050--Hb_004218_220 Hb_000975_130 Hb_000975_130 Hb_011206_050--Hb_000975_130 Hb_000956_060 Hb_000956_060 Hb_011206_050--Hb_000956_060 Hb_003010_010--Hb_036176_010 Hb_011457_130 Hb_011457_130 Hb_003010_010--Hb_011457_130 Hb_007044_220 Hb_007044_220 Hb_003010_010--Hb_007044_220 Hb_005694_180 Hb_005694_180 Hb_003010_010--Hb_005694_180 Hb_000051_030 Hb_000051_030 Hb_003010_010--Hb_000051_030 Hb_010614_020 Hb_010614_020 Hb_002044_110--Hb_010614_020 Hb_002044_110--Hb_002217_210 Hb_002044_110--Hb_004218_220 Hb_004635_040 Hb_004635_040 Hb_002044_110--Hb_004635_040 Hb_036356_010 Hb_036356_010 Hb_002044_110--Hb_036356_010 Hb_008959_050 Hb_008959_050 Hb_002044_110--Hb_008959_050 Hb_136884_010 Hb_136884_010 Hb_183820_010--Hb_136884_010 Hb_012395_150 Hb_012395_150 Hb_183820_010--Hb_012395_150 Hb_000002_230 Hb_000002_230 Hb_183820_010--Hb_000002_230 Hb_000365_290 Hb_000365_290 Hb_183820_010--Hb_000365_290 Hb_006020_010 Hb_006020_010 Hb_183820_010--Hb_006020_010 Hb_004590_010 Hb_004590_010 Hb_183820_010--Hb_004590_010 Hb_000189_490 Hb_000189_490 Hb_003442_010--Hb_000189_490 Hb_001481_020 Hb_001481_020 Hb_003442_010--Hb_001481_020 Hb_003442_010--Hb_183820_010 Hb_001103_040 Hb_001103_040 Hb_003442_010--Hb_001103_040 Hb_003442_010--Hb_000365_290 Hb_083493_020 Hb_083493_020 Hb_003442_010--Hb_083493_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0486811 0.293775 0.110237 0.488519 0 0.0334497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0370263 0 0 0.314608 0

CAGE analysis