Hb_002234_110

Information

Type -
Description -
Location Contig2234: 102788-103540
Sequence    

Annotation

kegg
ID mdm:103455142
description uncharacterized LOC103455142
nr
ID XP_008392963.1
description PREDICTED: uncharacterized protein LOC103455142 [Malus domestica]
swissprot
ID -
description -
trembl
ID M5XQU7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020120mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_110 0.0 - - PREDICTED: uncharacterized protein LOC103455142 [Malus domestica]
2 Hb_002045_280 0.3677626006 - - unnamed protein product [Vitis vinifera]
3 Hb_115791_020 0.3788676841 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
4 Hb_007042_010 0.3912921605 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000363_440 0.3957754395 - - -
6 Hb_065182_010 0.3961564179 - - hypothetical protein JCGZ_20878 [Jatropha curcas]
7 Hb_001387_030 0.3986192539 transcription factor TF Family: ERF hypothetical protein POPTR_0013s13920g [Populus trichocarpa]
8 Hb_007148_010 0.4185279873 - - PREDICTED: uncharacterized protein LOC103427080 [Malus domestica]
9 Hb_000258_380 0.4203934683 - - PREDICTED: F-box/kelch-repeat protein SKIP11-like [Jatropha curcas]
10 Hb_032299_050 0.4217448593 - - -
11 Hb_006040_080 0.4271270051 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002035_070 0.4277536692 - - hypothetical protein CICLE_v10033569mg [Citrus clementina]
13 Hb_025236_030 0.4358462153 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
14 Hb_015934_030 0.4363337886 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000188_030 0.4394088359 - - carboxylic ester hydrolase, putative [Ricinus communis]
16 Hb_005048_020 0.4402515734 - - Retrotransposon protein, putative [Theobroma cacao]
17 Hb_007537_010 0.4405212404 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_001525_010 0.4418703273 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
19 Hb_000364_040 0.4434710717 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
20 Hb_003078_050 0.4466414628 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]

Gene co-expression network

sample Hb_002234_110 Hb_002234_110 Hb_002045_280 Hb_002045_280 Hb_002234_110--Hb_002045_280 Hb_115791_020 Hb_115791_020 Hb_002234_110--Hb_115791_020 Hb_007042_010 Hb_007042_010 Hb_002234_110--Hb_007042_010 Hb_000363_440 Hb_000363_440 Hb_002234_110--Hb_000363_440 Hb_065182_010 Hb_065182_010 Hb_002234_110--Hb_065182_010 Hb_001387_030 Hb_001387_030 Hb_002234_110--Hb_001387_030 Hb_148121_080 Hb_148121_080 Hb_002045_280--Hb_148121_080 Hb_000258_380 Hb_000258_380 Hb_002045_280--Hb_000258_380 Hb_001060_110 Hb_001060_110 Hb_002045_280--Hb_001060_110 Hb_001141_070 Hb_001141_070 Hb_002045_280--Hb_001141_070 Hb_010560_060 Hb_010560_060 Hb_002045_280--Hb_010560_060 Hb_000139_200 Hb_000139_200 Hb_002045_280--Hb_000139_200 Hb_075807_010 Hb_075807_010 Hb_115791_020--Hb_075807_010 Hb_005048_020 Hb_005048_020 Hb_115791_020--Hb_005048_020 Hb_115791_020--Hb_001387_030 Hb_004734_010 Hb_004734_010 Hb_115791_020--Hb_004734_010 Hb_002918_180 Hb_002918_180 Hb_115791_020--Hb_002918_180 Hb_055101_010 Hb_055101_010 Hb_115791_020--Hb_055101_010 Hb_007802_020 Hb_007802_020 Hb_007042_010--Hb_007802_020 Hb_003494_040 Hb_003494_040 Hb_007042_010--Hb_003494_040 Hb_126103_010 Hb_126103_010 Hb_007042_010--Hb_126103_010 Hb_001568_110 Hb_001568_110 Hb_007042_010--Hb_001568_110 Hb_116349_040 Hb_116349_040 Hb_007042_010--Hb_116349_040 Hb_000840_040 Hb_000840_040 Hb_007042_010--Hb_000840_040 Hb_000362_220 Hb_000362_220 Hb_000363_440--Hb_000362_220 Hb_022132_040 Hb_022132_040 Hb_000363_440--Hb_022132_040 Hb_005702_030 Hb_005702_030 Hb_000363_440--Hb_005702_030 Hb_000457_170 Hb_000457_170 Hb_000363_440--Hb_000457_170 Hb_017434_060 Hb_017434_060 Hb_000363_440--Hb_017434_060 Hb_000050_090 Hb_000050_090 Hb_000363_440--Hb_000050_090 Hb_042778_010 Hb_042778_010 Hb_065182_010--Hb_042778_010 Hb_007336_030 Hb_007336_030 Hb_065182_010--Hb_007336_030 Hb_004934_080 Hb_004934_080 Hb_065182_010--Hb_004934_080 Hb_000802_120 Hb_000802_120 Hb_065182_010--Hb_000802_120 Hb_065182_010--Hb_001387_030 Hb_065182_010--Hb_000363_440 Hb_005408_050 Hb_005408_050 Hb_001387_030--Hb_005408_050 Hb_001387_030--Hb_075807_010 Hb_001387_030--Hb_055101_010 Hb_004200_020 Hb_004200_020 Hb_001387_030--Hb_004200_020 Hb_000990_060 Hb_000990_060 Hb_001387_030--Hb_000990_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.349157 0.810375 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.223564 0 0.30403 0 0.168053

CAGE analysis