Hb_002045_280

Information

Type -
Description -
Location Contig2045: 236373-237486
Sequence    

Annotation

kegg
ID rcu:RCOM_0990740
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID CBI26322.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9LY77
description Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1
trembl
ID A0A059D216
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01472 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_280 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_148121_080 0.2419236157 transcription factor TF Family: C2H2 PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
3 Hb_000258_380 0.2723354917 - - PREDICTED: F-box/kelch-repeat protein SKIP11-like [Jatropha curcas]
4 Hb_001060_110 0.2788190197 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
5 Hb_001141_070 0.2791749101 - - PREDICTED: homocysteine S-methyltransferase 3 [Jatropha curcas]
6 Hb_010560_060 0.2811468368 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
7 Hb_000139_200 0.2840580842 - - catalytic, putative [Ricinus communis]
8 Hb_005565_010 0.2882407515 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
9 Hb_005288_200 0.2885902763 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_001621_150 0.29137465 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
11 Hb_000270_560 0.2929134341 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
12 Hb_000707_060 0.29484003 - - -
13 Hb_003411_110 0.2965258881 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
14 Hb_001096_100 0.2987144889 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007803_060 0.299385615 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
16 Hb_006807_050 0.3002353594 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
17 Hb_000261_490 0.3040131521 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
18 Hb_000832_030 0.3049608062 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
19 Hb_002284_280 0.3050334269 transcription factor TF Family: HMG high mobility group protein [Hevea brasiliensis]
20 Hb_003321_010 0.3058335788 - - hypothetical protein RCOM_0884420 [Ricinus communis]

Gene co-expression network

sample Hb_002045_280 Hb_002045_280 Hb_148121_080 Hb_148121_080 Hb_002045_280--Hb_148121_080 Hb_000258_380 Hb_000258_380 Hb_002045_280--Hb_000258_380 Hb_001060_110 Hb_001060_110 Hb_002045_280--Hb_001060_110 Hb_001141_070 Hb_001141_070 Hb_002045_280--Hb_001141_070 Hb_010560_060 Hb_010560_060 Hb_002045_280--Hb_010560_060 Hb_000139_200 Hb_000139_200 Hb_002045_280--Hb_000139_200 Hb_000317_330 Hb_000317_330 Hb_148121_080--Hb_000317_330 Hb_148121_080--Hb_010560_060 Hb_000157_200 Hb_000157_200 Hb_148121_080--Hb_000157_200 Hb_005288_200 Hb_005288_200 Hb_148121_080--Hb_005288_200 Hb_003203_020 Hb_003203_020 Hb_148121_080--Hb_003203_020 Hb_000028_160 Hb_000028_160 Hb_148121_080--Hb_000028_160 Hb_003078_050 Hb_003078_050 Hb_000258_380--Hb_003078_050 Hb_000056_170 Hb_000056_170 Hb_000258_380--Hb_000056_170 Hb_000634_070 Hb_000634_070 Hb_000258_380--Hb_000634_070 Hb_003097_100 Hb_003097_100 Hb_000258_380--Hb_003097_100 Hb_010921_030 Hb_010921_030 Hb_000258_380--Hb_010921_030 Hb_001525_010 Hb_001525_010 Hb_000258_380--Hb_001525_010 Hb_001277_270 Hb_001277_270 Hb_001060_110--Hb_001277_270 Hb_012395_220 Hb_012395_220 Hb_001060_110--Hb_012395_220 Hb_002813_050 Hb_002813_050 Hb_001060_110--Hb_002813_050 Hb_001621_150 Hb_001621_150 Hb_001060_110--Hb_001621_150 Hb_000261_490 Hb_000261_490 Hb_001060_110--Hb_000261_490 Hb_003321_010 Hb_003321_010 Hb_001060_110--Hb_003321_010 Hb_001141_070--Hb_005288_200 Hb_005551_060 Hb_005551_060 Hb_001141_070--Hb_005551_060 Hb_155396_010 Hb_155396_010 Hb_001141_070--Hb_155396_010 Hb_000003_220 Hb_000003_220 Hb_001141_070--Hb_000003_220 Hb_155702_010 Hb_155702_010 Hb_001141_070--Hb_155702_010 Hb_005306_100 Hb_005306_100 Hb_001141_070--Hb_005306_100 Hb_000098_020 Hb_000098_020 Hb_010560_060--Hb_000098_020 Hb_116349_160 Hb_116349_160 Hb_010560_060--Hb_116349_160 Hb_028358_010 Hb_028358_010 Hb_010560_060--Hb_028358_010 Hb_007803_060 Hb_007803_060 Hb_010560_060--Hb_007803_060 Hb_002111_060 Hb_002111_060 Hb_010560_060--Hb_002111_060 Hb_000563_600 Hb_000563_600 Hb_010560_060--Hb_000563_600 Hb_162286_020 Hb_162286_020 Hb_000139_200--Hb_162286_020 Hb_000310_080 Hb_000310_080 Hb_000139_200--Hb_000310_080 Hb_000139_200--Hb_010560_060 Hb_000139_200--Hb_000317_330 Hb_000684_300 Hb_000684_300 Hb_000139_200--Hb_000684_300 Hb_055773_010 Hb_055773_010 Hb_000139_200--Hb_055773_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.796488 0.528032 0.035787 0.142002 0.0881143 0.0837102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.218177 0.0857249 0.297491 0 0.164475

CAGE analysis