Hb_002192_040

Information

Type -
Description -
Location Contig2192: 51316-52146
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22568: 50011-52162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002192_040 0.0 - - -
2 Hb_001335_040 0.2017564604 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012565_010 0.2053337971 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
4 Hb_019053_050 0.2100223374 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_011900_040 0.2131911842 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
6 Hb_000617_300 0.214431274 - - RALFL33, putative [Ricinus communis]
7 Hb_000617_070 0.215493405 - - hypothetical protein POPTR_0005s02420g [Populus trichocarpa]
8 Hb_009470_010 0.226338329 - - -
9 Hb_001141_260 0.2291143735 - - Uncharacterized protein TCM_020647 [Theobroma cacao]
10 Hb_002675_170 0.2300765513 - - hypothetical protein JCGZ_06235 [Jatropha curcas]
11 Hb_009010_040 0.2328895306 - - Peptide transporter, putative [Ricinus communis]
12 Hb_057343_010 0.2342948788 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
13 Hb_000959_200 0.2352589797 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
14 Hb_001174_040 0.2368875509 - - -
15 Hb_003020_200 0.2369363642 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
16 Hb_003207_050 0.2377171744 - - PREDICTED: cucumisin-like [Jatropha curcas]
17 Hb_001956_170 0.2408952467 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
18 Hb_011169_010 0.2412880352 - - mta/sah nucleosidase, putative [Ricinus communis]
19 Hb_000188_080 0.2421858525 - - PREDICTED: uncharacterized protein LOC105629484 [Jatropha curcas]
20 Hb_007677_010 0.2423730971 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]

Gene co-expression network

sample Hb_002192_040 Hb_002192_040 Hb_001335_040 Hb_001335_040 Hb_002192_040--Hb_001335_040 Hb_012565_010 Hb_012565_010 Hb_002192_040--Hb_012565_010 Hb_019053_050 Hb_019053_050 Hb_002192_040--Hb_019053_050 Hb_011900_040 Hb_011900_040 Hb_002192_040--Hb_011900_040 Hb_000617_300 Hb_000617_300 Hb_002192_040--Hb_000617_300 Hb_000617_070 Hb_000617_070 Hb_002192_040--Hb_000617_070 Hb_001335_040--Hb_019053_050 Hb_001335_040--Hb_011900_040 Hb_000083_260 Hb_000083_260 Hb_001335_040--Hb_000083_260 Hb_003528_090 Hb_003528_090 Hb_001335_040--Hb_003528_090 Hb_006889_010 Hb_006889_010 Hb_001335_040--Hb_006889_010 Hb_001157_120 Hb_001157_120 Hb_001335_040--Hb_001157_120 Hb_002675_170 Hb_002675_170 Hb_012565_010--Hb_002675_170 Hb_002193_070 Hb_002193_070 Hb_012565_010--Hb_002193_070 Hb_012565_010--Hb_011900_040 Hb_011169_010 Hb_011169_010 Hb_012565_010--Hb_011169_010 Hb_005455_100 Hb_005455_100 Hb_012565_010--Hb_005455_100 Hb_012565_010--Hb_000617_300 Hb_016120_030 Hb_016120_030 Hb_019053_050--Hb_016120_030 Hb_004031_060 Hb_004031_060 Hb_019053_050--Hb_004031_060 Hb_001091_040 Hb_001091_040 Hb_019053_050--Hb_001091_040 Hb_000086_530 Hb_000086_530 Hb_019053_050--Hb_000086_530 Hb_003371_030 Hb_003371_030 Hb_019053_050--Hb_003371_030 Hb_011900_040--Hb_000083_260 Hb_005539_330 Hb_005539_330 Hb_011900_040--Hb_005539_330 Hb_000331_660 Hb_000331_660 Hb_011900_040--Hb_000331_660 Hb_000012_340 Hb_000012_340 Hb_011900_040--Hb_000012_340 Hb_000429_070 Hb_000429_070 Hb_011900_040--Hb_000429_070 Hb_003020_200 Hb_003020_200 Hb_000617_300--Hb_003020_200 Hb_003411_120 Hb_003411_120 Hb_000617_300--Hb_003411_120 Hb_001758_090 Hb_001758_090 Hb_000617_300--Hb_001758_090 Hb_000617_300--Hb_003371_030 Hb_000617_300--Hb_019053_050 Hb_000995_020 Hb_000995_020 Hb_000617_300--Hb_000995_020 Hb_001174_040 Hb_001174_040 Hb_000617_070--Hb_001174_040 Hb_009470_010 Hb_009470_010 Hb_000617_070--Hb_009470_010 Hb_001141_260 Hb_001141_260 Hb_000617_070--Hb_001141_260 Hb_027472_250 Hb_027472_250 Hb_000617_070--Hb_027472_250 Hb_009620_080 Hb_009620_080 Hb_000617_070--Hb_009620_080 Hb_001956_170 Hb_001956_170 Hb_000617_070--Hb_001956_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 31.4021 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53373 0 1.33864 1.1465 1.36911

CAGE analysis