Hb_002085_040

Information

Type -
Description -
Location Contig2085: 78694-88591
Sequence    

Annotation

kegg
ID rcu:RCOM_0155160
description structural constituent of cell wall, putative
nr
ID XP_002530295.1
description structural constituent of cell wall, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SWC6
description Structural constituent of cell wall, putative OS=Ricinus communis GN=RCOM_0155160 PE=4 SV=1
Gene Ontology
ID GO:0016874
description structural constituent of cell

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002085_040 0.0 - - structural constituent of cell wall, putative [Ricinus communis]
2 Hb_000796_130 0.2382697855 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
3 Hb_000062_210 0.2432710372 - - PREDICTED: BAHD acyltransferase At5g47980-like [Pyrus x bretschneideri]
4 Hb_001623_120 0.2684651336 - - PREDICTED: uncharacterized protein LOC105650382 isoform X2 [Jatropha curcas]
5 Hb_030627_010 0.3005944516 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 [Sesamum indicum]
6 Hb_000668_130 0.3122012926 - - -
7 Hb_001951_160 0.3158702595 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
8 Hb_000128_030 0.3269293864 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000788_140 0.3293907747 - - conserved hypothetical protein [Ricinus communis]
10 Hb_024404_040 0.3327907074 - - hypothetical protein JCGZ_22351 [Jatropha curcas]
11 Hb_001755_030 0.3418523237 - - PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Populus euphratica]
12 Hb_023732_050 0.350570772 - - aldo-keto reductase, putative [Ricinus communis]
13 Hb_000416_030 0.353536373 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
14 Hb_012490_020 0.3591754877 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
15 Hb_137862_010 0.3602774032 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_002540_050 0.3682560417 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Jatropha curcas]
17 Hb_003026_040 0.3697303323 - - Uncharacterized protein TCM_007861 [Theobroma cacao]
18 Hb_000525_070 0.3701766859 - - PREDICTED: WAT1-related protein At5g40240-like [Jatropha curcas]
19 Hb_007558_130 0.3730859471 - - -
20 Hb_011794_100 0.3733322837 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002085_040 Hb_002085_040 Hb_000796_130 Hb_000796_130 Hb_002085_040--Hb_000796_130 Hb_000062_210 Hb_000062_210 Hb_002085_040--Hb_000062_210 Hb_001623_120 Hb_001623_120 Hb_002085_040--Hb_001623_120 Hb_030627_010 Hb_030627_010 Hb_002085_040--Hb_030627_010 Hb_000668_130 Hb_000668_130 Hb_002085_040--Hb_000668_130 Hb_001951_160 Hb_001951_160 Hb_002085_040--Hb_001951_160 Hb_000796_130--Hb_000062_210 Hb_000796_130--Hb_030627_010 Hb_007765_050 Hb_007765_050 Hb_000796_130--Hb_007765_050 Hb_000525_070 Hb_000525_070 Hb_000796_130--Hb_000525_070 Hb_000763_040 Hb_000763_040 Hb_000796_130--Hb_000763_040 Hb_000062_210--Hb_030627_010 Hb_000128_030 Hb_000128_030 Hb_000062_210--Hb_000128_030 Hb_000062_210--Hb_000525_070 Hb_003026_040 Hb_003026_040 Hb_000062_210--Hb_003026_040 Hb_000062_210--Hb_000763_040 Hb_001623_120--Hb_001951_160 Hb_024404_040 Hb_024404_040 Hb_001623_120--Hb_024404_040 Hb_000788_140 Hb_000788_140 Hb_001623_120--Hb_000788_140 Hb_130507_020 Hb_130507_020 Hb_001623_120--Hb_130507_020 Hb_000922_210 Hb_000922_210 Hb_001623_120--Hb_000922_210 Hb_002217_290 Hb_002217_290 Hb_001623_120--Hb_002217_290 Hb_030627_010--Hb_000128_030 Hb_002183_080 Hb_002183_080 Hb_030627_010--Hb_002183_080 Hb_003540_100 Hb_003540_100 Hb_030627_010--Hb_003540_100 Hb_007558_130 Hb_007558_130 Hb_030627_010--Hb_007558_130 Hb_003687_220 Hb_003687_220 Hb_000668_130--Hb_003687_220 Hb_177019_010 Hb_177019_010 Hb_000668_130--Hb_177019_010 Hb_011794_100 Hb_011794_100 Hb_000668_130--Hb_011794_100 Hb_000416_030 Hb_000416_030 Hb_000668_130--Hb_000416_030 Hb_001226_190 Hb_001226_190 Hb_000668_130--Hb_001226_190 Hb_002000_120 Hb_002000_120 Hb_000668_130--Hb_002000_120 Hb_001951_160--Hb_024404_040 Hb_001951_160--Hb_000788_140 Hb_001951_160--Hb_130507_020 Hb_007908_010 Hb_007908_010 Hb_001951_160--Hb_007908_010 Hb_001951_160--Hb_000922_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0627045 0.00692055 0.0169811 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0648455 0 0 0.0686799

CAGE analysis