Hb_002027_160

Information

Type -
Description -
Location Contig2027: 68812-74666
Sequence    

Annotation

kegg
ID rcu:RCOM_0647060
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002524779.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID P93051
description Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2
trembl
ID B9SFL0
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_0647060 PE=3 SV=1
Gene Ontology
ID GO:0016021
description sugar transporter erd6-like 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20690: 74867-76999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_160 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_000417_200 0.1364980737 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
3 Hb_001405_070 0.1380401929 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
4 Hb_004970_170 0.1413249017 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
5 Hb_002307_270 0.1461289491 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
6 Hb_004635_090 0.1552694094 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
7 Hb_000836_380 0.156430204 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
8 Hb_011671_410 0.1600867291 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
9 Hb_005706_040 0.1611255182 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
10 Hb_000599_190 0.1614864449 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
11 Hb_002988_040 0.164388791 - - -
12 Hb_000170_130 0.1649693699 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
13 Hb_001117_130 0.1650980722 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
14 Hb_002235_040 0.1667892077 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
15 Hb_006775_130 0.1679280982 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
16 Hb_001794_060 0.1700874069 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012725_060 0.171629171 - - protein binding protein, putative [Ricinus communis]
18 Hb_012506_040 0.1718253665 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
19 Hb_130016_010 0.171896949 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003906_160 0.1725592037 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_002027_160 Hb_002027_160 Hb_000417_200 Hb_000417_200 Hb_002027_160--Hb_000417_200 Hb_001405_070 Hb_001405_070 Hb_002027_160--Hb_001405_070 Hb_004970_170 Hb_004970_170 Hb_002027_160--Hb_004970_170 Hb_002307_270 Hb_002307_270 Hb_002027_160--Hb_002307_270 Hb_004635_090 Hb_004635_090 Hb_002027_160--Hb_004635_090 Hb_000836_380 Hb_000836_380 Hb_002027_160--Hb_000836_380 Hb_000417_200--Hb_001405_070 Hb_012725_060 Hb_012725_060 Hb_000417_200--Hb_012725_060 Hb_002235_040 Hb_002235_040 Hb_000417_200--Hb_002235_040 Hb_000170_130 Hb_000170_130 Hb_000417_200--Hb_000170_130 Hb_002686_090 Hb_002686_090 Hb_000417_200--Hb_002686_090 Hb_001242_130 Hb_001242_130 Hb_000417_200--Hb_001242_130 Hb_011671_410 Hb_011671_410 Hb_001405_070--Hb_011671_410 Hb_001405_070--Hb_012725_060 Hb_000230_500 Hb_000230_500 Hb_001405_070--Hb_000230_500 Hb_002542_110 Hb_002542_110 Hb_001405_070--Hb_002542_110 Hb_001405_070--Hb_000170_130 Hb_004079_060 Hb_004079_060 Hb_004970_170--Hb_004079_060 Hb_062226_070 Hb_062226_070 Hb_004970_170--Hb_062226_070 Hb_000599_190 Hb_000599_190 Hb_004970_170--Hb_000599_190 Hb_005725_210 Hb_005725_210 Hb_004970_170--Hb_005725_210 Hb_019863_070 Hb_019863_070 Hb_004970_170--Hb_019863_070 Hb_002818_030 Hb_002818_030 Hb_004970_170--Hb_002818_030 Hb_002307_270--Hb_000836_380 Hb_001411_140 Hb_001411_140 Hb_002307_270--Hb_001411_140 Hb_000964_130 Hb_000964_130 Hb_002307_270--Hb_000964_130 Hb_001405_160 Hb_001405_160 Hb_002307_270--Hb_001405_160 Hb_001217_050 Hb_001217_050 Hb_002307_270--Hb_001217_050 Hb_000173_470 Hb_000173_470 Hb_002307_270--Hb_000173_470 Hb_000574_400 Hb_000574_400 Hb_004635_090--Hb_000574_400 Hb_002988_040 Hb_002988_040 Hb_004635_090--Hb_002988_040 Hb_001969_110 Hb_001969_110 Hb_004635_090--Hb_001969_110 Hb_000031_170 Hb_000031_170 Hb_004635_090--Hb_000031_170 Hb_004635_090--Hb_011671_410 Hb_000913_020 Hb_000913_020 Hb_004635_090--Hb_000913_020 Hb_000836_380--Hb_001405_160 Hb_000017_220 Hb_000017_220 Hb_000836_380--Hb_000017_220 Hb_000028_130 Hb_000028_130 Hb_000836_380--Hb_000028_130 Hb_004435_030 Hb_004435_030 Hb_000836_380--Hb_004435_030 Hb_004916_010 Hb_004916_010 Hb_000836_380--Hb_004916_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0500909 0.244845 0.0205367 0.113976 0.0664115 0.0739437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.06119 0.192561 0.135761 0.0864496 0.201573

CAGE analysis