Hb_001723_090

Information

Type -
Description -
Location Contig1723: 101809-108741
Sequence    

Annotation

kegg
ID pop:POPTR_0010s16200g
description POPTRDRAFT_226043; hypothetical protein
nr
ID XP_012084156.1
description PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
swissprot
ID Q9M548
description DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1
trembl
ID A0A067JVR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19062 PE=4 SV=1
Gene Ontology
ID GO:0016740
description dna (cytosine-5)-methyltransferase drm2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001723_090 0.0 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
2 Hb_003052_060 0.2684881753 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
3 Hb_001638_070 0.2875264112 transcription factor TF Family: bHLH Basic helix-loop-helix DNA-binding family protein [Theobroma cacao]
4 Hb_002231_030 0.2880024235 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
5 Hb_003688_070 0.2884165863 - - PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
6 Hb_004108_110 0.2900132924 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012022_140 0.2928198279 - - ADP,ATP carrier protein, putative [Ricinus communis]
8 Hb_001766_030 0.2983791305 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
9 Hb_007044_060 0.3000709806 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000997_190 0.30462823 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
11 Hb_002105_030 0.3081239125 - - -
12 Hb_000572_040 0.3083770829 - - hypothetical protein POPTR_0006s14815g [Populus trichocarpa]
13 Hb_000622_080 0.3106147075 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
14 Hb_000390_270 0.3115681827 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000140_360 0.3132430486 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
16 Hb_004089_020 0.3140626869 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
17 Hb_000676_310 0.3174977011 - - BnaC09g40680D [Brassica napus]
18 Hb_007741_100 0.3199453335 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
19 Hb_001846_070 0.3208543905 - - PREDICTED: fructokinase-1 [Jatropha curcas]
20 Hb_000282_070 0.3217395757 - - PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Jatropha curcas]

Gene co-expression network

sample Hb_001723_090 Hb_001723_090 Hb_003052_060 Hb_003052_060 Hb_001723_090--Hb_003052_060 Hb_001638_070 Hb_001638_070 Hb_001723_090--Hb_001638_070 Hb_002231_030 Hb_002231_030 Hb_001723_090--Hb_002231_030 Hb_003688_070 Hb_003688_070 Hb_001723_090--Hb_003688_070 Hb_004108_110 Hb_004108_110 Hb_001723_090--Hb_004108_110 Hb_012022_140 Hb_012022_140 Hb_001723_090--Hb_012022_140 Hb_011214_050 Hb_011214_050 Hb_003052_060--Hb_011214_050 Hb_001360_070 Hb_001360_070 Hb_003052_060--Hb_001360_070 Hb_027654_060 Hb_027654_060 Hb_003052_060--Hb_027654_060 Hb_004846_090 Hb_004846_090 Hb_003052_060--Hb_004846_090 Hb_002784_120 Hb_002784_120 Hb_003052_060--Hb_002784_120 Hb_000853_190 Hb_000853_190 Hb_003052_060--Hb_000853_190 Hb_009680_040 Hb_009680_040 Hb_001638_070--Hb_009680_040 Hb_000997_190 Hb_000997_190 Hb_001638_070--Hb_000997_190 Hb_002784_100 Hb_002784_100 Hb_001638_070--Hb_002784_100 Hb_001638_070--Hb_002231_030 Hb_028271_020 Hb_028271_020 Hb_001638_070--Hb_028271_020 Hb_001488_370 Hb_001488_370 Hb_001638_070--Hb_001488_370 Hb_007044_060 Hb_007044_060 Hb_002231_030--Hb_007044_060 Hb_003044_090 Hb_003044_090 Hb_002231_030--Hb_003044_090 Hb_002231_030--Hb_000997_190 Hb_000906_040 Hb_000906_040 Hb_002231_030--Hb_000906_040 Hb_000487_230 Hb_000487_230 Hb_002231_030--Hb_000487_230 Hb_000699_090 Hb_000699_090 Hb_002231_030--Hb_000699_090 Hb_000191_080 Hb_000191_080 Hb_003688_070--Hb_000191_080 Hb_000156_210 Hb_000156_210 Hb_003688_070--Hb_000156_210 Hb_003688_070--Hb_004108_110 Hb_000140_270 Hb_000140_270 Hb_003688_070--Hb_000140_270 Hb_012022_170 Hb_012022_170 Hb_003688_070--Hb_012022_170 Hb_140627_010 Hb_140627_010 Hb_003688_070--Hb_140627_010 Hb_019762_050 Hb_019762_050 Hb_004108_110--Hb_019762_050 Hb_001766_030 Hb_001766_030 Hb_004108_110--Hb_001766_030 Hb_004089_020 Hb_004089_020 Hb_004108_110--Hb_004089_020 Hb_007741_100 Hb_007741_100 Hb_004108_110--Hb_007741_100 Hb_004108_110--Hb_012022_140 Hb_001097_090 Hb_001097_090 Hb_004108_110--Hb_001097_090 Hb_001252_220 Hb_001252_220 Hb_012022_140--Hb_001252_220 Hb_000005_300 Hb_000005_300 Hb_012022_140--Hb_000005_300 Hb_012022_140--Hb_004089_020 Hb_001373_060 Hb_001373_060 Hb_012022_140--Hb_001373_060 Hb_002232_060 Hb_002232_060 Hb_012022_140--Hb_002232_060 Hb_000676_310 Hb_000676_310 Hb_012022_140--Hb_000676_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.310102 0.0798539 0.201294 0.0614633 0.104837 0.00729904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.32726 0.567805 0.136272 0.474768

CAGE analysis