Hb_001360_070

Information

Type -
Description -
Location Contig1360: 102566-106949
Sequence    

Annotation

kegg
ID rcu:RCOM_1353860
description hypothetical protein
nr
ID XP_002519470.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S0F1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1353860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10031: 102716-106811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001360_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000453_120 0.0962775362 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
3 Hb_000265_050 0.1124649237 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
4 Hb_005063_050 0.1134870099 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
5 Hb_007416_030 0.1139196422 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
6 Hb_003994_250 0.1139868333 - - membrane associated ring finger 1,8, putative [Ricinus communis]
7 Hb_000453_090 0.114094258 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
8 Hb_002798_020 0.1156033327 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
9 Hb_000840_180 0.1175387451 - - protein BOLA2 [Jatropha curcas]
10 Hb_004846_090 0.1187152491 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
11 Hb_000527_060 0.1191053213 - - Protein C20orf11, putative [Ricinus communis]
12 Hb_000906_040 0.1195674724 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
13 Hb_001484_070 0.1199388124 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003540_240 0.1203966501 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
15 Hb_001341_090 0.1207791543 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
16 Hb_004127_020 0.1218934228 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
17 Hb_002843_140 0.1219919231 - - hypothetical protein JCGZ_20933 [Jatropha curcas]
18 Hb_000029_200 0.1225623383 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
19 Hb_002235_350 0.1231969165 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
20 Hb_002343_060 0.1233811085 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001360_070 Hb_001360_070 Hb_000453_120 Hb_000453_120 Hb_001360_070--Hb_000453_120 Hb_000265_050 Hb_000265_050 Hb_001360_070--Hb_000265_050 Hb_005063_050 Hb_005063_050 Hb_001360_070--Hb_005063_050 Hb_007416_030 Hb_007416_030 Hb_001360_070--Hb_007416_030 Hb_003994_250 Hb_003994_250 Hb_001360_070--Hb_003994_250 Hb_000453_090 Hb_000453_090 Hb_001360_070--Hb_000453_090 Hb_001484_070 Hb_001484_070 Hb_000453_120--Hb_001484_070 Hb_001085_120 Hb_001085_120 Hb_000453_120--Hb_001085_120 Hb_001512_080 Hb_001512_080 Hb_000453_120--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_000453_120--Hb_002110_200 Hb_000086_280 Hb_000086_280 Hb_000453_120--Hb_000086_280 Hb_003077_040 Hb_003077_040 Hb_000453_120--Hb_003077_040 Hb_002798_020 Hb_002798_020 Hb_000265_050--Hb_002798_020 Hb_004127_020 Hb_004127_020 Hb_000265_050--Hb_004127_020 Hb_000265_050--Hb_005063_050 Hb_000136_170 Hb_000136_170 Hb_000265_050--Hb_000136_170 Hb_003893_050 Hb_003893_050 Hb_000265_050--Hb_003893_050 Hb_004459_040 Hb_004459_040 Hb_000265_050--Hb_004459_040 Hb_005063_050--Hb_003893_050 Hb_008921_020 Hb_008921_020 Hb_005063_050--Hb_008921_020 Hb_010672_060 Hb_010672_060 Hb_005063_050--Hb_010672_060 Hb_000699_160 Hb_000699_160 Hb_005063_050--Hb_000699_160 Hb_143496_010 Hb_143496_010 Hb_005063_050--Hb_143496_010 Hb_000608_370 Hb_000608_370 Hb_007416_030--Hb_000608_370 Hb_002686_020 Hb_002686_020 Hb_007416_030--Hb_002686_020 Hb_000788_090 Hb_000788_090 Hb_007416_030--Hb_000788_090 Hb_002864_050 Hb_002864_050 Hb_007416_030--Hb_002864_050 Hb_001047_230 Hb_001047_230 Hb_007416_030--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_007416_030--Hb_003683_110 Hb_004102_110 Hb_004102_110 Hb_003994_250--Hb_004102_110 Hb_003994_250--Hb_000453_120 Hb_001269_170 Hb_001269_170 Hb_003994_250--Hb_001269_170 Hb_003994_250--Hb_005063_050 Hb_138585_060 Hb_138585_060 Hb_003994_250--Hb_138585_060 Hb_026527_050 Hb_026527_050 Hb_003994_250--Hb_026527_050 Hb_000453_090--Hb_003683_110 Hb_001300_040 Hb_001300_040 Hb_000453_090--Hb_001300_040 Hb_004846_090 Hb_004846_090 Hb_000453_090--Hb_004846_090 Hb_006925_040 Hb_006925_040 Hb_000453_090--Hb_006925_040 Hb_000453_090--Hb_010672_060 Hb_001780_040 Hb_001780_040 Hb_000453_090--Hb_001780_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.929 10.3199 23.7358 20.4696 27.355 18.8647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.1902 78.5439 40.345 7.86557 23.9605

CAGE analysis