Hb_003994_250

Information

Type -
Description -
Location Contig3994: 244216-250319
Sequence    

Annotation

kegg
ID rcu:RCOM_1573880
description membrane associated ring finger 1,8, putative
nr
ID XP_002513323.1
description membrane associated ring finger 1,8, putative [Ricinus communis]
swissprot
ID Q9DBD2
description E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2 SV=1
trembl
ID B9RHV4
description Membrane associated ring finger 1,8, putative OS=Ricinus communis GN=RCOM_1573880 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase march8 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39772: 244246-250315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_250 0.0 - - membrane associated ring finger 1,8, putative [Ricinus communis]
2 Hb_004102_110 0.0795027769 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
3 Hb_000453_120 0.096390752 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
4 Hb_001269_170 0.1010210621 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
5 Hb_005063_050 0.1013109298 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
6 Hb_138585_060 0.1016514418 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
7 Hb_026527_050 0.1025883551 - - PREDICTED: 39S ribosomal protein L47, mitochondrial-like isoform X1 [Populus euphratica]
8 Hb_000265_050 0.1061877759 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
9 Hb_001484_070 0.1071177005 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003540_240 0.1082898626 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
11 Hb_002235_350 0.1093495601 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
12 Hb_000016_160 0.1112214156 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
13 Hb_004127_020 0.1122475054 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
14 Hb_001341_090 0.1132269232 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
15 Hb_000029_200 0.113846344 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
16 Hb_001360_070 0.1139868333 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001085_120 0.1158154006 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
18 Hb_011236_010 0.1162612624 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
19 Hb_006198_070 0.116636685 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
20 Hb_000527_060 0.1166635804 - - Protein C20orf11, putative [Ricinus communis]

Gene co-expression network

sample Hb_003994_250 Hb_003994_250 Hb_004102_110 Hb_004102_110 Hb_003994_250--Hb_004102_110 Hb_000453_120 Hb_000453_120 Hb_003994_250--Hb_000453_120 Hb_001269_170 Hb_001269_170 Hb_003994_250--Hb_001269_170 Hb_005063_050 Hb_005063_050 Hb_003994_250--Hb_005063_050 Hb_138585_060 Hb_138585_060 Hb_003994_250--Hb_138585_060 Hb_026527_050 Hb_026527_050 Hb_003994_250--Hb_026527_050 Hb_024439_010 Hb_024439_010 Hb_004102_110--Hb_024439_010 Hb_000016_160 Hb_000016_160 Hb_004102_110--Hb_000016_160 Hb_004143_150 Hb_004143_150 Hb_004102_110--Hb_004143_150 Hb_004102_110--Hb_026527_050 Hb_009615_070 Hb_009615_070 Hb_004102_110--Hb_009615_070 Hb_000527_060 Hb_000527_060 Hb_004102_110--Hb_000527_060 Hb_001484_070 Hb_001484_070 Hb_000453_120--Hb_001484_070 Hb_001085_120 Hb_001085_120 Hb_000453_120--Hb_001085_120 Hb_001512_080 Hb_001512_080 Hb_000453_120--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_000453_120--Hb_002110_200 Hb_000086_280 Hb_000086_280 Hb_000453_120--Hb_000086_280 Hb_003077_040 Hb_003077_040 Hb_000453_120--Hb_003077_040 Hb_001143_080 Hb_001143_080 Hb_001269_170--Hb_001143_080 Hb_004375_100 Hb_004375_100 Hb_001269_170--Hb_004375_100 Hb_012753_160 Hb_012753_160 Hb_001269_170--Hb_012753_160 Hb_000136_170 Hb_000136_170 Hb_001269_170--Hb_000136_170 Hb_005463_040 Hb_005463_040 Hb_001269_170--Hb_005463_040 Hb_007044_060 Hb_007044_060 Hb_001269_170--Hb_007044_060 Hb_003893_050 Hb_003893_050 Hb_005063_050--Hb_003893_050 Hb_008921_020 Hb_008921_020 Hb_005063_050--Hb_008921_020 Hb_010672_060 Hb_010672_060 Hb_005063_050--Hb_010672_060 Hb_000699_160 Hb_000699_160 Hb_005063_050--Hb_000699_160 Hb_000265_050 Hb_000265_050 Hb_005063_050--Hb_000265_050 Hb_143496_010 Hb_143496_010 Hb_005063_050--Hb_143496_010 Hb_021409_030 Hb_021409_030 Hb_138585_060--Hb_021409_030 Hb_000072_080 Hb_000072_080 Hb_138585_060--Hb_000072_080 Hb_000258_170 Hb_000258_170 Hb_138585_060--Hb_000258_170 Hb_001141_030 Hb_001141_030 Hb_138585_060--Hb_001141_030 Hb_007100_030 Hb_007100_030 Hb_138585_060--Hb_007100_030 Hb_000479_010 Hb_000479_010 Hb_138585_060--Hb_000479_010 Hb_006198_070 Hb_006198_070 Hb_026527_050--Hb_006198_070 Hb_003052_190 Hb_003052_190 Hb_026527_050--Hb_003052_190 Hb_000667_070 Hb_000667_070 Hb_026527_050--Hb_000667_070 Hb_003540_240 Hb_003540_240 Hb_026527_050--Hb_003540_240 Hb_005496_140 Hb_005496_140 Hb_026527_050--Hb_005496_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4087 7.13738 9.75953 15.0024 11.9773 12.1832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1437 48.2424 24.582 8.43479 11.6732

CAGE analysis