Hb_011214_050

Information

Type -
Description -
Location Contig11214: 34558-39430
Sequence    

Annotation

kegg
ID rcu:RCOM_0286430
description Phytoene synthase, chloroplast precursor, putative
nr
ID ACY42665.1
description phytoene synthase 2 [Manihot esculenta]
swissprot
ID P49293
description Phytoene synthase, chloroplastic OS=Cucumis melo GN=PSY PE=2 SV=1
trembl
ID E0XGY1
description Phytoene synthase 2 OS=Manihot esculenta GN=PSY2 PE=2 SV=1
Gene Ontology
ID GO:0010287
description phytoene synthase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03653: 34528-39216 , PASA_asmbl_03654: 36370-36687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011214_050 0.0 - - phytoene synthase 2 [Manihot esculenta]
2 Hb_003052_060 0.1396997735 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
3 Hb_001427_200 0.1503483324 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
4 Hb_005834_020 0.1510007397 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
5 Hb_001322_110 0.1515479734 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001811_160 0.1579295573 - - PREDICTED: probable glycosyltransferase At5g03795 [Eucalyptus grandis]
7 Hb_000185_210 0.1580195684 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
8 Hb_002241_010 0.1583650345 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
9 Hb_001360_070 0.1585075252 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012022_150 0.1591599285 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
11 Hb_002408_020 0.1594022129 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
12 Hb_002163_040 0.1607817837 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007389_010 0.1613800259 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
14 Hb_111985_050 0.1643335914 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
15 Hb_002333_060 0.1643372274 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_003077_020 0.1646814791 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000753_240 0.1663246689 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
18 Hb_000462_090 0.1669724861 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
19 Hb_001584_200 0.1669793034 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
20 Hb_000028_070 0.1687082106 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]

Gene co-expression network

sample Hb_011214_050 Hb_011214_050 Hb_003052_060 Hb_003052_060 Hb_011214_050--Hb_003052_060 Hb_001427_200 Hb_001427_200 Hb_011214_050--Hb_001427_200 Hb_005834_020 Hb_005834_020 Hb_011214_050--Hb_005834_020 Hb_001322_110 Hb_001322_110 Hb_011214_050--Hb_001322_110 Hb_001811_160 Hb_001811_160 Hb_011214_050--Hb_001811_160 Hb_000185_210 Hb_000185_210 Hb_011214_050--Hb_000185_210 Hb_001360_070 Hb_001360_070 Hb_003052_060--Hb_001360_070 Hb_027654_060 Hb_027654_060 Hb_003052_060--Hb_027654_060 Hb_004846_090 Hb_004846_090 Hb_003052_060--Hb_004846_090 Hb_002784_120 Hb_002784_120 Hb_003052_060--Hb_002784_120 Hb_000853_190 Hb_000853_190 Hb_003052_060--Hb_000853_190 Hb_001268_420 Hb_001268_420 Hb_001427_200--Hb_001268_420 Hb_003683_120 Hb_003683_120 Hb_001427_200--Hb_003683_120 Hb_032264_070 Hb_032264_070 Hb_001427_200--Hb_032264_070 Hb_004195_270 Hb_004195_270 Hb_001427_200--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_001427_200--Hb_001105_030 Hb_012675_050 Hb_012675_050 Hb_001427_200--Hb_012675_050 Hb_011867_010 Hb_011867_010 Hb_005834_020--Hb_011867_010 Hb_012799_180 Hb_012799_180 Hb_005834_020--Hb_012799_180 Hb_006031_020 Hb_006031_020 Hb_005834_020--Hb_006031_020 Hb_000258_170 Hb_000258_170 Hb_005834_020--Hb_000258_170 Hb_012762_050 Hb_012762_050 Hb_005834_020--Hb_012762_050 Hb_000069_110 Hb_000069_110 Hb_005834_020--Hb_000069_110 Hb_012799_170 Hb_012799_170 Hb_001322_110--Hb_012799_170 Hb_000137_040 Hb_000137_040 Hb_001322_110--Hb_000137_040 Hb_002408_020 Hb_002408_020 Hb_001322_110--Hb_002408_020 Hb_003124_150 Hb_003124_150 Hb_001322_110--Hb_003124_150 Hb_000811_070 Hb_000811_070 Hb_001322_110--Hb_000811_070 Hb_000510_290 Hb_000510_290 Hb_001322_110--Hb_000510_290 Hb_000487_260 Hb_000487_260 Hb_001811_160--Hb_000487_260 Hb_001935_100 Hb_001935_100 Hb_001811_160--Hb_001935_100 Hb_019053_060 Hb_019053_060 Hb_001811_160--Hb_019053_060 Hb_005539_010 Hb_005539_010 Hb_001811_160--Hb_005539_010 Hb_000462_090 Hb_000462_090 Hb_001811_160--Hb_000462_090 Hb_001195_460 Hb_001195_460 Hb_001811_160--Hb_001195_460 Hb_002876_220 Hb_002876_220 Hb_000185_210--Hb_002876_220 Hb_012022_150 Hb_012022_150 Hb_000185_210--Hb_012022_150 Hb_003029_070 Hb_003029_070 Hb_000185_210--Hb_003029_070 Hb_002477_300 Hb_002477_300 Hb_000185_210--Hb_002477_300 Hb_008173_020 Hb_008173_020 Hb_000185_210--Hb_008173_020 Hb_000012_250 Hb_000012_250 Hb_000185_210--Hb_000012_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.332 14.5914 77.4121 23.6998 72.6601 35.5613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.3094 113.163 80.0182 13.9048 86.2881

CAGE analysis