Hb_005834_020

Information

Type -
Description -
Location Contig5834: 26285-32267
Sequence    

Annotation

kegg
ID rcu:RCOM_1092950
description Root phototropism protein, putative
nr
ID XP_012075651.1
description PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
swissprot
ID Q9S9Q9
description BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2
trembl
ID A0A067KRP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09248 PE=4 SV=1
Gene Ontology
ID GO:0005886
description btb poz domain-containing protein at1g30440

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49885: 25966-26720 , PASA_asmbl_49886: 29046-29150
cDNA
(Sanger)
(ID:Location)		 003_L08.ab1: 25966-26664

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005834_020 0.0 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
2 Hb_011867_010 0.0938950319 - - PREDICTED: uncharacterized protein LOC105641409 [Jatropha curcas]
3 Hb_012799_180 0.1294881349 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
4 Hb_006031_020 0.1359947147 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
5 Hb_000258_170 0.1381985575 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
6 Hb_012762_050 0.1394184519 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
7 Hb_000069_110 0.139800878 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
8 Hb_005016_090 0.140748699 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
9 Hb_047503_010 0.1413124295 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
10 Hb_003020_020 0.1421483011 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
11 Hb_000608_370 0.1430309124 - - acyl-carrier-protein [Triadica sebifera]
12 Hb_000479_010 0.146024989 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
13 Hb_007416_030 0.1465575048 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
14 Hb_007317_200 0.1471368165 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_129924_010 0.1491577489 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
16 Hb_000270_270 0.1494108913 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
17 Hb_001360_070 0.1494668808 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001703_030 0.1502268322 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
19 Hb_171900_080 0.1505398324 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_012016_010 0.1508189054 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005834_020 Hb_005834_020 Hb_011867_010 Hb_011867_010 Hb_005834_020--Hb_011867_010 Hb_012799_180 Hb_012799_180 Hb_005834_020--Hb_012799_180 Hb_006031_020 Hb_006031_020 Hb_005834_020--Hb_006031_020 Hb_000258_170 Hb_000258_170 Hb_005834_020--Hb_000258_170 Hb_012762_050 Hb_012762_050 Hb_005834_020--Hb_012762_050 Hb_000069_110 Hb_000069_110 Hb_005834_020--Hb_000069_110 Hb_011867_010--Hb_006031_020 Hb_011867_010--Hb_000069_110 Hb_002609_020 Hb_002609_020 Hb_011867_010--Hb_002609_020 Hb_001703_030 Hb_001703_030 Hb_011867_010--Hb_001703_030 Hb_000270_270 Hb_000270_270 Hb_011867_010--Hb_000270_270 Hb_000479_010 Hb_000479_010 Hb_011867_010--Hb_000479_010 Hb_012799_180--Hb_001703_030 Hb_085781_010 Hb_085781_010 Hb_012799_180--Hb_085781_010 Hb_012799_180--Hb_011867_010 Hb_008554_030 Hb_008554_030 Hb_012799_180--Hb_008554_030 Hb_017904_010 Hb_017904_010 Hb_012799_180--Hb_017904_010 Hb_001776_140 Hb_001776_140 Hb_012799_180--Hb_001776_140 Hb_002226_070 Hb_002226_070 Hb_006031_020--Hb_002226_070 Hb_002183_090 Hb_002183_090 Hb_006031_020--Hb_002183_090 Hb_000059_370 Hb_000059_370 Hb_006031_020--Hb_000059_370 Hb_007416_030 Hb_007416_030 Hb_006031_020--Hb_007416_030 Hb_002686_020 Hb_002686_020 Hb_006031_020--Hb_002686_020 Hb_000608_370 Hb_000608_370 Hb_000258_170--Hb_000608_370 Hb_021409_030 Hb_021409_030 Hb_000258_170--Hb_021409_030 Hb_138585_060 Hb_138585_060 Hb_000258_170--Hb_138585_060 Hb_005511_160 Hb_005511_160 Hb_000258_170--Hb_005511_160 Hb_000788_090 Hb_000788_090 Hb_000258_170--Hb_000788_090 Hb_001047_230 Hb_001047_230 Hb_000258_170--Hb_001047_230 Hb_135545_010 Hb_135545_010 Hb_012762_050--Hb_135545_010 Hb_000473_040 Hb_000473_040 Hb_012762_050--Hb_000473_040 Hb_000221_220 Hb_000221_220 Hb_012762_050--Hb_000221_220 Hb_001512_070 Hb_001512_070 Hb_012762_050--Hb_001512_070 Hb_002007_060 Hb_002007_060 Hb_012762_050--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_012762_050--Hb_011571_020 Hb_011316_040 Hb_011316_040 Hb_000069_110--Hb_011316_040 Hb_000069_110--Hb_002609_020 Hb_132835_010 Hb_132835_010 Hb_000069_110--Hb_132835_010 Hb_001277_330 Hb_001277_330 Hb_000069_110--Hb_001277_330 Hb_000510_320 Hb_000510_320 Hb_000069_110--Hb_000510_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.802 12.5105 21.9215 9.17025 44.0664 21.6666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4172 59.9889 41.0668 4.88524 18.6747

CAGE analysis