Hb_001009_060

Information

Type -
Description -
Location Contig1009: 22098-26868
Sequence    

Annotation

kegg
ID rcu:RCOM_1506860
description AMP dependent CoA ligase, putative (EC:1.13.12.7)
nr
ID XP_012079878.1
description PREDICTED: 4-coumarate--CoA ligase-like 9 [Jatropha curcas]
swissprot
ID Q84P23
description 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2
trembl
ID A0A067K499
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11328 PE=4 SV=1
Gene Ontology
ID GO:0016874
description 4-coumarate-- ligase-like 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00517: 24973-26847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_060 0.0 - - PREDICTED: 4-coumarate--CoA ligase-like 9 [Jatropha curcas]
2 Hb_003913_040 0.1369502843 - - ferric reductase oxidase [Manihot esculenta]
3 Hb_011609_210 0.1773389047 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
4 Hb_000820_100 0.1818936977 - - RNA-directed DNA polymerase [Arachis hypogaea]
5 Hb_000442_170 0.182194392 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_000123_340 0.1833147677 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
7 Hb_001514_150 0.1901708482 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
8 Hb_000375_250 0.1903214049 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
9 Hb_004520_010 0.1910791998 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
10 Hb_010565_030 0.193219796 - - hypothetical protein VITISV_006810 [Vitis vinifera]
11 Hb_035651_010 0.1968409459 - - receptor-kinase, putative [Ricinus communis]
12 Hb_005542_010 0.1972097036 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
13 Hb_001366_260 0.2025025808 - - T4.15 [Malus x robusta]
14 Hb_000640_330 0.2034180034 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000173_110 0.2084663862 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
16 Hb_007543_020 0.2097330555 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
17 Hb_004864_010 0.2117577326 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
18 Hb_012404_080 0.2120387689 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
19 Hb_006588_020 0.2134973181 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
20 Hb_009848_060 0.2142098995 - - unknown [Glycine max]

Gene co-expression network

sample Hb_001009_060 Hb_001009_060 Hb_003913_040 Hb_003913_040 Hb_001009_060--Hb_003913_040 Hb_011609_210 Hb_011609_210 Hb_001009_060--Hb_011609_210 Hb_000820_100 Hb_000820_100 Hb_001009_060--Hb_000820_100 Hb_000442_170 Hb_000442_170 Hb_001009_060--Hb_000442_170 Hb_000123_340 Hb_000123_340 Hb_001009_060--Hb_000123_340 Hb_001514_150 Hb_001514_150 Hb_001009_060--Hb_001514_150 Hb_003913_040--Hb_001514_150 Hb_006588_020 Hb_006588_020 Hb_003913_040--Hb_006588_020 Hb_005092_090 Hb_005092_090 Hb_003913_040--Hb_005092_090 Hb_001366_260 Hb_001366_260 Hb_003913_040--Hb_001366_260 Hb_003913_040--Hb_000820_100 Hb_000009_390 Hb_000009_390 Hb_003913_040--Hb_000009_390 Hb_010565_030 Hb_010565_030 Hb_011609_210--Hb_010565_030 Hb_012404_080 Hb_012404_080 Hb_011609_210--Hb_012404_080 Hb_005542_010 Hb_005542_010 Hb_011609_210--Hb_005542_010 Hb_000977_150 Hb_000977_150 Hb_011609_210--Hb_000977_150 Hb_000454_160 Hb_000454_160 Hb_011609_210--Hb_000454_160 Hb_018272_050 Hb_018272_050 Hb_011609_210--Hb_018272_050 Hb_000820_100--Hb_001366_260 Hb_007543_020 Hb_007543_020 Hb_000820_100--Hb_007543_020 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000173_110 Hb_000173_110 Hb_000820_100--Hb_000173_110 Hb_116784_020 Hb_116784_020 Hb_000820_100--Hb_116784_020 Hb_000820_100--Hb_000123_340 Hb_001301_010 Hb_001301_010 Hb_000442_170--Hb_001301_010 Hb_000776_020 Hb_000776_020 Hb_000442_170--Hb_000776_020 Hb_001963_110 Hb_001963_110 Hb_000442_170--Hb_001963_110 Hb_003992_220 Hb_003992_220 Hb_000442_170--Hb_003992_220 Hb_006594_080 Hb_006594_080 Hb_000442_170--Hb_006594_080 Hb_000191_100 Hb_000191_100 Hb_000442_170--Hb_000191_100 Hb_001385_070 Hb_001385_070 Hb_000123_340--Hb_001385_070 Hb_000123_340--Hb_000173_110 Hb_127552_050 Hb_127552_050 Hb_000123_340--Hb_127552_050 Hb_000123_340--Hb_007543_020 Hb_000123_340--Hb_010565_030 Hb_001514_150--Hb_000009_390 Hb_001514_150--Hb_006588_020 Hb_001514_150--Hb_005092_090 Hb_001836_010 Hb_001836_010 Hb_001514_150--Hb_001836_010 Hb_007035_010 Hb_007035_010 Hb_001514_150--Hb_007035_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.018288 3.3198 2.36906 0.718058 0.00855958 0.0261652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.207711 0.473969 0.962643 4.11962 11.0071

CAGE analysis