Hb_000983_030

Information

Type -
Description -
Location Contig983: 9315-13840
Sequence    

Annotation

kegg
ID rcu:RCOM_1595710
description 26S protease regulatory subunit S10b, putative (EC:3.6.4.3)
nr
ID XP_012071930.1
description PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
swissprot
ID Q9MAK9
description 26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=1 SV=1
trembl
ID A0A067KQY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04482 PE=3 SV=1
Gene Ontology
ID GO:0000502
description 26s protease regulatory subunit s10b homolog b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64443: 9318-13812
cDNA
(Sanger)
(ID:Location)		 021_I16.ab1: 9321-11551 , 027_E12.ab1: 9323-11552 , 032_E17.ab1: 9323-11558

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000983_030 0.0 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
2 Hb_004586_420 0.0905531175 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
3 Hb_002660_170 0.0996679912 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
4 Hb_001307_030 0.0999184151 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
5 Hb_001123_160 0.1003705948 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_000136_350 0.1004237531 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
7 Hb_001892_070 0.1008316724 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
8 Hb_186982_040 0.1009684754 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
9 Hb_032920_070 0.1009918464 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
10 Hb_008232_010 0.1014639081 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
11 Hb_002042_150 0.102104832 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
12 Hb_002811_100 0.1023813897 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
13 Hb_007218_120 0.1024487364 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
14 Hb_045003_010 0.1030611568 - - Stomatin-1, putative [Ricinus communis]
15 Hb_001016_100 0.1053322864 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
16 Hb_000920_200 0.1065632003 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
17 Hb_001353_010 0.1071810464 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
18 Hb_005976_080 0.1075480027 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
19 Hb_004109_340 0.1077806564 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
20 Hb_002876_020 0.1090817806 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000983_030 Hb_000983_030 Hb_004586_420 Hb_004586_420 Hb_000983_030--Hb_004586_420 Hb_002660_170 Hb_002660_170 Hb_000983_030--Hb_002660_170 Hb_001307_030 Hb_001307_030 Hb_000983_030--Hb_001307_030 Hb_001123_160 Hb_001123_160 Hb_000983_030--Hb_001123_160 Hb_000136_350 Hb_000136_350 Hb_000983_030--Hb_000136_350 Hb_001892_070 Hb_001892_070 Hb_000983_030--Hb_001892_070 Hb_006573_190 Hb_006573_190 Hb_004586_420--Hb_006573_190 Hb_000003_230 Hb_000003_230 Hb_004586_420--Hb_000003_230 Hb_007676_080 Hb_007676_080 Hb_004586_420--Hb_007676_080 Hb_008494_100 Hb_008494_100 Hb_004586_420--Hb_008494_100 Hb_001489_090 Hb_001489_090 Hb_004586_420--Hb_001489_090 Hb_000390_300 Hb_000390_300 Hb_004586_420--Hb_000390_300 Hb_000025_190 Hb_000025_190 Hb_002660_170--Hb_000025_190 Hb_007218_120 Hb_007218_120 Hb_002660_170--Hb_007218_120 Hb_006059_010 Hb_006059_010 Hb_002660_170--Hb_006059_010 Hb_000060_050 Hb_000060_050 Hb_002660_170--Hb_000060_050 Hb_000012_310 Hb_000012_310 Hb_002660_170--Hb_000012_310 Hb_002477_290 Hb_002477_290 Hb_002660_170--Hb_002477_290 Hb_025098_010 Hb_025098_010 Hb_001307_030--Hb_025098_010 Hb_008566_030 Hb_008566_030 Hb_001307_030--Hb_008566_030 Hb_185255_010 Hb_185255_010 Hb_001307_030--Hb_185255_010 Hb_011249_020 Hb_011249_020 Hb_001307_030--Hb_011249_020 Hb_000297_120 Hb_000297_120 Hb_001307_030--Hb_000297_120 Hb_000329_210 Hb_000329_210 Hb_001307_030--Hb_000329_210 Hb_008232_010 Hb_008232_010 Hb_001123_160--Hb_008232_010 Hb_003622_040 Hb_003622_040 Hb_001123_160--Hb_003622_040 Hb_003291_020 Hb_003291_020 Hb_001123_160--Hb_003291_020 Hb_148209_010 Hb_148209_010 Hb_001123_160--Hb_148209_010 Hb_000563_200 Hb_000563_200 Hb_001123_160--Hb_000563_200 Hb_000300_430 Hb_000300_430 Hb_001123_160--Hb_000300_430 Hb_186982_040 Hb_186982_040 Hb_000136_350--Hb_186982_040 Hb_003098_020 Hb_003098_020 Hb_000136_350--Hb_003098_020 Hb_000136_260 Hb_000136_260 Hb_000136_350--Hb_000136_260 Hb_000538_120 Hb_000538_120 Hb_000136_350--Hb_000538_120 Hb_000377_120 Hb_000377_120 Hb_000136_350--Hb_000377_120 Hb_000419_020 Hb_000419_020 Hb_000136_350--Hb_000419_020 Hb_001016_100 Hb_001016_100 Hb_001892_070--Hb_001016_100 Hb_000403_070 Hb_000403_070 Hb_001892_070--Hb_000403_070 Hb_002045_060 Hb_002045_060 Hb_001892_070--Hb_002045_060 Hb_001892_070--Hb_008566_030 Hb_000035_480 Hb_000035_480 Hb_001892_070--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_001892_070--Hb_000457_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2825 16.2813 30.5823 60.6533 20.9446 20.6598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.6321 70.7056 42.933 50.3575 43.6536

CAGE analysis