Hb_000836_320

Information

Type -
Description -
Location Contig836: 234789-241612
Sequence    

Annotation

kegg
ID pop:POPTR_0403s00200g
description hypothetical protein
nr
ID XP_012083836.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067JX86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14352 PE=4 SV=1
Gene Ontology
ID GO:0016616
description upf0481 protein at3g47200-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_320 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_177215_020 0.1234002869 - - acc synthase, putative [Ricinus communis]
3 Hb_000054_140 0.1391437506 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
4 Hb_002375_060 0.1456111715 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
5 Hb_001198_160 0.1467606038 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_001619_020 0.1468717391 - - LRR receptor-like kinase family protein [Medicago truncatula]
7 Hb_000985_140 0.1519070434 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
8 Hb_138086_010 0.1538170602 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
9 Hb_002370_060 0.1556880135 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
10 Hb_000836_220 0.1563723464 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_000087_200 0.1575839966 - - PREDICTED: uncharacterized protein LOC105641954 [Jatropha curcas]
12 Hb_001247_160 0.157887164 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
13 Hb_005867_030 0.1590543092 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
14 Hb_028486_010 0.1617535707 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
15 Hb_009476_070 0.1625845533 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
16 Hb_046109_010 0.1669815994 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
17 Hb_007574_050 0.1685155674 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
18 Hb_000365_180 0.1687511817 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
19 Hb_000402_030 0.1692142402 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
20 Hb_000679_260 0.1703374575 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000836_320 Hb_000836_320 Hb_177215_020 Hb_177215_020 Hb_000836_320--Hb_177215_020 Hb_000054_140 Hb_000054_140 Hb_000836_320--Hb_000054_140 Hb_002375_060 Hb_002375_060 Hb_000836_320--Hb_002375_060 Hb_001198_160 Hb_001198_160 Hb_000836_320--Hb_001198_160 Hb_001619_020 Hb_001619_020 Hb_000836_320--Hb_001619_020 Hb_000985_140 Hb_000985_140 Hb_000836_320--Hb_000985_140 Hb_177215_020--Hb_001198_160 Hb_002370_060 Hb_002370_060 Hb_177215_020--Hb_002370_060 Hb_000836_220 Hb_000836_220 Hb_177215_020--Hb_000836_220 Hb_177215_020--Hb_000054_140 Hb_138086_010 Hb_138086_010 Hb_177215_020--Hb_138086_010 Hb_028841_010 Hb_028841_010 Hb_177215_020--Hb_028841_010 Hb_000054_140--Hb_002370_060 Hb_006573_280 Hb_006573_280 Hb_000054_140--Hb_006573_280 Hb_004837_110 Hb_004837_110 Hb_000054_140--Hb_004837_110 Hb_000054_140--Hb_001198_160 Hb_000054_140--Hb_000836_220 Hb_033187_020 Hb_033187_020 Hb_000054_140--Hb_033187_020 Hb_023386_050 Hb_023386_050 Hb_002375_060--Hb_023386_050 Hb_000366_050 Hb_000366_050 Hb_002375_060--Hb_000366_050 Hb_164926_050 Hb_164926_050 Hb_002375_060--Hb_164926_050 Hb_029576_010 Hb_029576_010 Hb_002375_060--Hb_029576_010 Hb_008021_010 Hb_008021_010 Hb_002375_060--Hb_008021_010 Hb_000028_330 Hb_000028_330 Hb_001198_160--Hb_000028_330 Hb_001610_070 Hb_001610_070 Hb_001198_160--Hb_001610_070 Hb_001198_160--Hb_000836_220 Hb_001198_160--Hb_138086_010 Hb_005867_030 Hb_005867_030 Hb_001619_020--Hb_005867_030 Hb_000031_160 Hb_000031_160 Hb_001619_020--Hb_000031_160 Hb_001635_230 Hb_001635_230 Hb_001619_020--Hb_001635_230 Hb_000237_070 Hb_000237_070 Hb_001619_020--Hb_000237_070 Hb_005463_070 Hb_005463_070 Hb_001619_020--Hb_005463_070 Hb_005628_050 Hb_005628_050 Hb_001619_020--Hb_005628_050 Hb_004393_030 Hb_004393_030 Hb_000985_140--Hb_004393_030 Hb_003078_070 Hb_003078_070 Hb_000985_140--Hb_003078_070 Hb_021254_020 Hb_021254_020 Hb_000985_140--Hb_021254_020 Hb_001247_160 Hb_001247_160 Hb_000985_140--Hb_001247_160 Hb_000032_090 Hb_000032_090 Hb_000985_140--Hb_000032_090 Hb_000071_090 Hb_000071_090 Hb_000985_140--Hb_000071_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.149306 0.11813 0.0901572 0 0.0139133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0368432 0.0282096

CAGE analysis