Hb_000237_240

Information

Type -
Description -
Location Contig237: 321713-322630
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_240 0.0 - - -
2 Hb_006420_090 0.2969257926 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
3 Hb_026527_020 0.3013394527 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
4 Hb_003750_030 0.3153559584 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
5 Hb_000675_060 0.3271119185 - - cytochrome P450, putative [Ricinus communis]
6 Hb_083103_030 0.3288134912 - - putative retrotransposon protein [Malus domestica]
7 Hb_103832_030 0.3289726458 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
8 Hb_172503_010 0.3290106952 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
9 Hb_115472_010 0.3300482845 - - -
10 Hb_002740_020 0.3305090034 - - -
11 Hb_022137_030 0.3314865545 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
12 Hb_003052_230 0.3355066628 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001995_020 0.3358720636 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
14 Hb_000836_490 0.336369192 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
15 Hb_011016_010 0.3376455717 - - PREDICTED: auxin response factor 2-like [Jatropha curcas]
16 Hb_012368_060 0.3403935062 - - -
17 Hb_011457_060 0.34049581 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
18 Hb_001999_110 0.340748302 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
19 Hb_000635_120 0.3407773192 - - -
20 Hb_035492_010 0.341681718 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]

Gene co-expression network

sample Hb_000237_240 Hb_000237_240 Hb_006420_090 Hb_006420_090 Hb_000237_240--Hb_006420_090 Hb_026527_020 Hb_026527_020 Hb_000237_240--Hb_026527_020 Hb_003750_030 Hb_003750_030 Hb_000237_240--Hb_003750_030 Hb_000675_060 Hb_000675_060 Hb_000237_240--Hb_000675_060 Hb_083103_030 Hb_083103_030 Hb_000237_240--Hb_083103_030 Hb_103832_030 Hb_103832_030 Hb_000237_240--Hb_103832_030 Hb_007101_290 Hb_007101_290 Hb_006420_090--Hb_007101_290 Hb_006420_090--Hb_026527_020 Hb_007317_080 Hb_007317_080 Hb_006420_090--Hb_007317_080 Hb_105328_030 Hb_105328_030 Hb_006420_090--Hb_105328_030 Hb_000300_130 Hb_000300_130 Hb_006420_090--Hb_000300_130 Hb_000836_490 Hb_000836_490 Hb_006420_090--Hb_000836_490 Hb_007885_050 Hb_007885_050 Hb_026527_020--Hb_007885_050 Hb_001268_130 Hb_001268_130 Hb_026527_020--Hb_001268_130 Hb_011016_010 Hb_011016_010 Hb_026527_020--Hb_011016_010 Hb_026527_020--Hb_000836_490 Hb_003038_170 Hb_003038_170 Hb_026527_020--Hb_003038_170 Hb_080147_100 Hb_080147_100 Hb_003750_030--Hb_080147_100 Hb_004208_130 Hb_004208_130 Hb_003750_030--Hb_004208_130 Hb_003226_160 Hb_003226_160 Hb_003750_030--Hb_003226_160 Hb_000116_420 Hb_000116_420 Hb_003750_030--Hb_000116_420 Hb_002798_010 Hb_002798_010 Hb_003750_030--Hb_002798_010 Hb_000139_420 Hb_000139_420 Hb_003750_030--Hb_000139_420 Hb_158092_060 Hb_158092_060 Hb_000675_060--Hb_158092_060 Hb_000061_090 Hb_000061_090 Hb_000675_060--Hb_000061_090 Hb_001004_100 Hb_001004_100 Hb_000675_060--Hb_001004_100 Hb_003947_040 Hb_003947_040 Hb_000675_060--Hb_003947_040 Hb_002471_260 Hb_002471_260 Hb_000675_060--Hb_002471_260 Hb_003592_030 Hb_003592_030 Hb_000675_060--Hb_003592_030 Hb_083103_030--Hb_103832_030 Hb_172503_010 Hb_172503_010 Hb_083103_030--Hb_172503_010 Hb_115472_010 Hb_115472_010 Hb_083103_030--Hb_115472_010 Hb_002740_020 Hb_002740_020 Hb_083103_030--Hb_002740_020 Hb_022137_030 Hb_022137_030 Hb_083103_030--Hb_022137_030 Hb_001995_020 Hb_001995_020 Hb_083103_030--Hb_001995_020 Hb_103832_030--Hb_172503_010 Hb_103832_030--Hb_115472_010 Hb_103832_030--Hb_002740_020 Hb_103832_030--Hb_022137_030 Hb_103832_030--Hb_001995_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.189462 0.131687 0 0.0887302 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.148325 4.19449 0.194841 3.1189 1.07387

CAGE analysis