Hb_000165_190

Information

Type -
Description -
Location Contig165: 172270-174348
Sequence    

Annotation

kegg
ID rcu:RCOM_0839600
description ubiquitin-protein ligase, putative
nr
ID XP_012086997.1
description PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
swissprot
ID Q9SNC6
description U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1
trembl
ID B9SQQ3
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0839600 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_190 0.0 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
2 Hb_005288_030 0.173251095 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
3 Hb_004156_010 0.1821243604 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
4 Hb_001021_140 0.1932008592 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
5 Hb_001227_020 0.1975490922 - - -
6 Hb_001558_070 0.2068640878 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
7 Hb_000077_470 0.214116228 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
8 Hb_001863_100 0.218225812 - - conserved hypothetical protein [Ricinus communis]
9 Hb_031862_090 0.2209221301 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
10 Hb_006198_140 0.2214739109 - - hypothetical protein L484_015208 [Morus notabilis]
11 Hb_031954_010 0.2243235785 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_004341_010 0.2259945397 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
13 Hb_003119_070 0.2265012465 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
14 Hb_081448_010 0.2274997389 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
15 Hb_001157_150 0.2283477604 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
16 Hb_000935_070 0.2288098245 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_005081_080 0.2308639917 - - hypothetical protein JCGZ_16787 [Jatropha curcas]
18 Hb_028207_030 0.2320171678 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
19 Hb_000077_460 0.2329743285 - - -
20 Hb_002660_100 0.2332982593 - - plasma membrane intrinsic protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000165_190 Hb_000165_190 Hb_005288_030 Hb_005288_030 Hb_000165_190--Hb_005288_030 Hb_004156_010 Hb_004156_010 Hb_000165_190--Hb_004156_010 Hb_001021_140 Hb_001021_140 Hb_000165_190--Hb_001021_140 Hb_001227_020 Hb_001227_020 Hb_000165_190--Hb_001227_020 Hb_001558_070 Hb_001558_070 Hb_000165_190--Hb_001558_070 Hb_000077_470 Hb_000077_470 Hb_000165_190--Hb_000077_470 Hb_005288_030--Hb_004156_010 Hb_002660_100 Hb_002660_100 Hb_005288_030--Hb_002660_100 Hb_051100_010 Hb_051100_010 Hb_005288_030--Hb_051100_010 Hb_001481_020 Hb_001481_020 Hb_005288_030--Hb_001481_020 Hb_000608_020 Hb_000608_020 Hb_005288_030--Hb_000608_020 Hb_027445_080 Hb_027445_080 Hb_004156_010--Hb_027445_080 Hb_031862_090 Hb_031862_090 Hb_004156_010--Hb_031862_090 Hb_005203_010 Hb_005203_010 Hb_004156_010--Hb_005203_010 Hb_002762_070 Hb_002762_070 Hb_004156_010--Hb_002762_070 Hb_017661_020 Hb_017661_020 Hb_004156_010--Hb_017661_020 Hb_002282_030 Hb_002282_030 Hb_004156_010--Hb_002282_030 Hb_081448_010 Hb_081448_010 Hb_001021_140--Hb_081448_010 Hb_001021_140--Hb_031862_090 Hb_005081_080 Hb_005081_080 Hb_001021_140--Hb_005081_080 Hb_000703_320 Hb_000703_320 Hb_001021_140--Hb_000703_320 Hb_001021_140--Hb_000077_470 Hb_004341_010 Hb_004341_010 Hb_001021_140--Hb_004341_010 Hb_001283_010 Hb_001283_010 Hb_001227_020--Hb_001283_010 Hb_000077_460 Hb_000077_460 Hb_001227_020--Hb_000077_460 Hb_000365_290 Hb_000365_290 Hb_001227_020--Hb_000365_290 Hb_001227_020--Hb_002762_070 Hb_028207_030 Hb_028207_030 Hb_001227_020--Hb_028207_030 Hb_003556_060 Hb_003556_060 Hb_001227_020--Hb_003556_060 Hb_001862_170 Hb_001862_170 Hb_001558_070--Hb_001862_170 Hb_001558_070--Hb_000608_020 Hb_001454_360 Hb_001454_360 Hb_001558_070--Hb_001454_360 Hb_000429_110 Hb_000429_110 Hb_001558_070--Hb_000429_110 Hb_008948_060 Hb_008948_060 Hb_001558_070--Hb_008948_060 Hb_073171_010 Hb_073171_010 Hb_001558_070--Hb_073171_010 Hb_009083_080 Hb_009083_080 Hb_000077_470--Hb_009083_080 Hb_003253_060 Hb_003253_060 Hb_000077_470--Hb_003253_060 Hb_001157_150 Hb_001157_150 Hb_000077_470--Hb_001157_150 Hb_000077_470--Hb_005081_080 Hb_006418_010 Hb_006418_010 Hb_000077_470--Hb_006418_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.267092 0 0.106674 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0170123 0.0322935 0.250334 0

CAGE analysis