Hb_000100_120

Information

Type -
Description -
Location Contig100: 295412-300711
Sequence    

Annotation

kegg
ID sot:102595311
description uncharacterized LOC102595311
nr
ID ABN06064.1
description RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
swissprot
ID Q8I7P9
description Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A2Q2C7
description RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold OS=Medicago truncatula GN=MtrDRAFT_AC150244g37v2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000100_120 0.0 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
2 Hb_000648_150 0.1495346994 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
3 Hb_003915_030 0.1596164747 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
4 Hb_005352_010 0.1669781365 - - -
5 Hb_115031_010 0.1683700951 - - photosystem II P680 chlorophyll A apoprotein, partial (chloroplast) [Oenothera grandiflora]
6 Hb_027522_020 0.1720117289 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_000627_200 0.1790216144 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
8 Hb_001645_020 0.1813298282 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
9 Hb_182972_020 0.1842473505 - - cytochrome b6 [Gossypium barbadense]
10 Hb_145745_010 0.1847672916 - - BnaUnng00830D [Brassica napus]
11 Hb_145745_030 0.1866181998 - - BnaC09g26890D [Brassica napus]
12 Hb_106692_020 0.1868153447 - - NADH dehydrogenase subunit F, partial (chloroplast) [Hevea sp. Gillespie 4272]
13 Hb_007645_020 0.1868432566 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
14 Hb_019253_040 0.1884988374 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006040_010 0.1885624809 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
16 Hb_003693_030 0.1894538483 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
17 Hb_003693_040 0.1916414337 - - NADH dehydrogenase subunit 1 [Hevea brasiliensis]
18 Hb_027745_010 0.1935299995 - - 50S ribosomal protein L2, putative [Ricinus communis]
19 Hb_023547_010 0.1951773026 - - protein binding protein, putative [Ricinus communis]
20 Hb_001338_080 0.1969075946 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]

Gene co-expression network

sample Hb_000100_120 Hb_000100_120 Hb_000648_150 Hb_000648_150 Hb_000100_120--Hb_000648_150 Hb_003915_030 Hb_003915_030 Hb_000100_120--Hb_003915_030 Hb_005352_010 Hb_005352_010 Hb_000100_120--Hb_005352_010 Hb_115031_010 Hb_115031_010 Hb_000100_120--Hb_115031_010 Hb_027522_020 Hb_027522_020 Hb_000100_120--Hb_027522_020 Hb_000627_200 Hb_000627_200 Hb_000100_120--Hb_000627_200 Hb_159308_010 Hb_159308_010 Hb_000648_150--Hb_159308_010 Hb_000648_150--Hb_000627_200 Hb_000648_150--Hb_115031_010 Hb_007645_060 Hb_007645_060 Hb_000648_150--Hb_007645_060 Hb_182972_020 Hb_182972_020 Hb_000648_150--Hb_182972_020 Hb_145745_030 Hb_145745_030 Hb_000648_150--Hb_145745_030 Hb_006040_010 Hb_006040_010 Hb_003915_030--Hb_006040_010 Hb_003915_030--Hb_027522_020 Hb_145745_010 Hb_145745_010 Hb_003915_030--Hb_145745_010 Hb_006040_020 Hb_006040_020 Hb_003915_030--Hb_006040_020 Hb_001490_020 Hb_001490_020 Hb_003915_030--Hb_001490_020 Hb_007645_020 Hb_007645_020 Hb_003915_030--Hb_007645_020 Hb_005352_010--Hb_027522_020 Hb_022599_010 Hb_022599_010 Hb_005352_010--Hb_022599_010 Hb_062317_010 Hb_062317_010 Hb_005352_010--Hb_062317_010 Hb_123951_010 Hb_123951_010 Hb_005352_010--Hb_123951_010 Hb_005352_010--Hb_003915_030 Hb_004762_020 Hb_004762_020 Hb_005352_010--Hb_004762_020 Hb_106692_020 Hb_106692_020 Hb_115031_010--Hb_106692_020 Hb_001674_050 Hb_001674_050 Hb_115031_010--Hb_001674_050 Hb_115031_010--Hb_182972_020 Hb_001645_020 Hb_001645_020 Hb_115031_010--Hb_001645_020 Hb_141708_010 Hb_141708_010 Hb_115031_010--Hb_141708_010 Hb_027522_020--Hb_022599_010 Hb_027522_020--Hb_062317_010 Hb_006778_010 Hb_006778_010 Hb_027522_020--Hb_006778_010 Hb_001255_070 Hb_001255_070 Hb_027522_020--Hb_001255_070 Hb_000627_200--Hb_182972_020 Hb_000627_200--Hb_007645_060 Hb_000627_200--Hb_001645_020 Hb_001338_170 Hb_001338_170 Hb_000627_200--Hb_001338_170 Hb_051924_010 Hb_051924_010 Hb_000627_200--Hb_051924_010 Hb_003693_030 Hb_003693_030 Hb_000627_200--Hb_003693_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00741981 0.00669731 0 0.0341435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00871807 0 0.00690665 0.429569

CAGE analysis