Hb_189208_040

Information

Type -
Description -
Location Contig189208: 12903-15274
Sequence    

Annotation

kegg
ID pop:POPTR_0002s18920g
description POPTRDRAFT_552606; hypothetical protein
nr
ID XP_002301546.2
description hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
swissprot
ID Q1A173
description Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1
trembl
ID B9GT90
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s18920g PE=4 SV=2
Gene Ontology
ID GO:0003677
description protein radialis-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189208_040 0.0 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
2 Hb_004837_080 0.1124898618 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
3 Hb_000608_190 0.1231846725 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
4 Hb_007620_020 0.1267607282 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
5 Hb_000920_100 0.1291000181 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_089124_010 0.1301002663 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
7 Hb_002713_060 0.1330213084 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
8 Hb_000254_080 0.1343143733 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
9 Hb_001269_540 0.134517401 - - hypothetical protein VITISV_038016 [Vitis vinifera]
10 Hb_002119_150 0.1358636955 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
11 Hb_003058_170 0.13829803 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
12 Hb_005057_030 0.1406528523 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
13 Hb_010978_020 0.1418531652 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL12 [Jatropha curcas]
14 Hb_000958_090 0.1418848958 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
15 Hb_004934_130 0.1437396025 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
16 Hb_001541_200 0.1437889868 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
17 Hb_001296_060 0.1464920804 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
18 Hb_000670_070 0.1474323292 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
19 Hb_001488_160 0.1477077807 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
20 Hb_080797_010 0.1478411912 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]

Gene co-expression network

sample Hb_189208_040 Hb_189208_040 Hb_004837_080 Hb_004837_080 Hb_189208_040--Hb_004837_080 Hb_000608_190 Hb_000608_190 Hb_189208_040--Hb_000608_190 Hb_007620_020 Hb_007620_020 Hb_189208_040--Hb_007620_020 Hb_000920_100 Hb_000920_100 Hb_189208_040--Hb_000920_100 Hb_089124_010 Hb_089124_010 Hb_189208_040--Hb_089124_010 Hb_002713_060 Hb_002713_060 Hb_189208_040--Hb_002713_060 Hb_000254_080 Hb_000254_080 Hb_004837_080--Hb_000254_080 Hb_002119_150 Hb_002119_150 Hb_004837_080--Hb_002119_150 Hb_001269_540 Hb_001269_540 Hb_004837_080--Hb_001269_540 Hb_080797_010 Hb_080797_010 Hb_004837_080--Hb_080797_010 Hb_004837_080--Hb_007620_020 Hb_000122_230 Hb_000122_230 Hb_004837_080--Hb_000122_230 Hb_000608_190--Hb_007620_020 Hb_000670_070 Hb_000670_070 Hb_000608_190--Hb_000670_070 Hb_000424_140 Hb_000424_140 Hb_000608_190--Hb_000424_140 Hb_003358_030 Hb_003358_030 Hb_000608_190--Hb_003358_030 Hb_000608_190--Hb_089124_010 Hb_000958_090 Hb_000958_090 Hb_000608_190--Hb_000958_090 Hb_007620_020--Hb_089124_010 Hb_007620_020--Hb_000670_070 Hb_002245_060 Hb_002245_060 Hb_007620_020--Hb_002245_060 Hb_007620_020--Hb_000122_230 Hb_000920_100--Hb_004837_080 Hb_000920_100--Hb_000254_080 Hb_000230_490 Hb_000230_490 Hb_000920_100--Hb_000230_490 Hb_004934_130 Hb_004934_130 Hb_000920_100--Hb_004934_130 Hb_000920_100--Hb_089124_010 Hb_001097_140 Hb_001097_140 Hb_000920_100--Hb_001097_140 Hb_089124_010--Hb_004837_080 Hb_089124_010--Hb_000670_070 Hb_089124_010--Hb_080797_010 Hb_089124_010--Hb_003358_030 Hb_005057_030 Hb_005057_030 Hb_002713_060--Hb_005057_030 Hb_173387_010 Hb_173387_010 Hb_002713_060--Hb_173387_010 Hb_010222_060 Hb_010222_060 Hb_002713_060--Hb_010222_060 Hb_002636_070 Hb_002636_070 Hb_002713_060--Hb_002636_070 Hb_000120_480 Hb_000120_480 Hb_002713_060--Hb_000120_480 Hb_009522_020 Hb_009522_020 Hb_002713_060--Hb_009522_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.698644 1.24162 3.09274 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.125163 0 0.168018 0.36653 5.75184

CAGE analysis