Hb_172426_020

Information

Type -
Description -
Location Contig172426: 13795-14847
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12720g
description POPTRDRAFT_766130; hypothetical protein
nr
ID XP_012072495.1
description PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Jatropha curcas]
swissprot
ID Q9FGW0
description Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana GN=FLA20 PE=3 SV=1
trembl
ID A0A067KSQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04676 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16285: 14044-14424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172426_020 0.0 - - PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Jatropha curcas]
2 Hb_000115_210 0.196087697 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
3 Hb_005357_170 0.196166457 - - Pectinesterase precursor, putative [Ricinus communis]
4 Hb_150179_010 0.1971147116 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
5 Hb_004957_010 0.1971725178 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
6 Hb_000997_220 0.1978505473 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
7 Hb_029584_030 0.1979569554 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
8 Hb_003754_010 0.1983037799 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
9 Hb_001308_010 0.199763752 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000664_010 0.2008299774 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
11 Hb_004440_030 0.2011706651 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
12 Hb_011224_030 0.2017390707 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
13 Hb_001557_030 0.2026210778 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
14 Hb_153544_020 0.2056833222 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
15 Hb_004225_010 0.2060166739 - - -
16 Hb_014834_100 0.2074435232 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
17 Hb_003685_070 0.2075287841 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
18 Hb_005653_050 0.2083364488 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
19 Hb_003765_010 0.2097811514 - - berberine bridge enzyme [Hevea brasiliensis]
20 Hb_001887_010 0.2106114038 - - mta/sah nucleosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_172426_020 Hb_172426_020 Hb_000115_210 Hb_000115_210 Hb_172426_020--Hb_000115_210 Hb_005357_170 Hb_005357_170 Hb_172426_020--Hb_005357_170 Hb_150179_010 Hb_150179_010 Hb_172426_020--Hb_150179_010 Hb_004957_010 Hb_004957_010 Hb_172426_020--Hb_004957_010 Hb_000997_220 Hb_000997_220 Hb_172426_020--Hb_000997_220 Hb_029584_030 Hb_029584_030 Hb_172426_020--Hb_029584_030 Hb_004162_150 Hb_004162_150 Hb_000115_210--Hb_004162_150 Hb_000307_160 Hb_000307_160 Hb_000115_210--Hb_000307_160 Hb_005015_090 Hb_005015_090 Hb_000115_210--Hb_005015_090 Hb_015183_090 Hb_015183_090 Hb_000115_210--Hb_015183_090 Hb_000331_380 Hb_000331_380 Hb_000115_210--Hb_000331_380 Hb_000431_050 Hb_000431_050 Hb_000115_210--Hb_000431_050 Hb_003685_070 Hb_003685_070 Hb_005357_170--Hb_003685_070 Hb_003765_010 Hb_003765_010 Hb_005357_170--Hb_003765_010 Hb_001887_010 Hb_001887_010 Hb_005357_170--Hb_001887_010 Hb_055276_010 Hb_055276_010 Hb_005357_170--Hb_055276_010 Hb_001433_230 Hb_001433_230 Hb_005357_170--Hb_001433_230 Hb_011224_030 Hb_011224_030 Hb_005357_170--Hb_011224_030 Hb_150179_010--Hb_011224_030 Hb_001557_030 Hb_001557_030 Hb_150179_010--Hb_001557_030 Hb_150179_010--Hb_029584_030 Hb_000664_010 Hb_000664_010 Hb_150179_010--Hb_000664_010 Hb_007007_140 Hb_007007_140 Hb_150179_010--Hb_007007_140 Hb_150179_010--Hb_003685_070 Hb_003754_010 Hb_003754_010 Hb_004957_010--Hb_003754_010 Hb_001308_010 Hb_001308_010 Hb_004957_010--Hb_001308_010 Hb_153544_020 Hb_153544_020 Hb_004957_010--Hb_153544_020 Hb_004957_010--Hb_000997_220 Hb_006651_020 Hb_006651_020 Hb_004957_010--Hb_006651_020 Hb_010833_010 Hb_010833_010 Hb_004957_010--Hb_010833_010 Hb_000997_220--Hb_003754_010 Hb_000997_220--Hb_001308_010 Hb_000997_220--Hb_153544_020 Hb_000483_340 Hb_000483_340 Hb_000997_220--Hb_000483_340 Hb_001856_250 Hb_001856_250 Hb_000997_220--Hb_001856_250 Hb_029584_030--Hb_000664_010 Hb_005665_100 Hb_005665_100 Hb_029584_030--Hb_005665_100 Hb_029584_030--Hb_011224_030 Hb_002471_310 Hb_002471_310 Hb_029584_030--Hb_002471_310 Hb_000227_290 Hb_000227_290 Hb_029584_030--Hb_000227_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0492857 0.477088 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0475382 0 0 0 0.0767657

CAGE analysis