Hb_156144_040

Information

Type transcription factor
Description TF Family: bHLH
Location Contig156144: 47586-49491
Sequence    

Annotation

kegg
ID rcu:RCOM_0187390
description DNA binding protein, putative
nr
ID XP_002528891.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9LSL1
description Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1
trembl
ID B9SSC2
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0187390 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh93-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13563: 48780-49026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156144_040 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_000038_090 0.1272329084 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
3 Hb_000631_130 0.1311505804 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
4 Hb_001168_010 0.1337512964 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
5 Hb_007044_070 0.1394051439 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
6 Hb_004445_090 0.1526508619 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000933_200 0.1540052025 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
8 Hb_003253_020 0.1600592631 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
9 Hb_142522_030 0.1636520153 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
10 Hb_000327_300 0.1655617746 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
11 Hb_002272_160 0.1660401331 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
12 Hb_004586_080 0.1661118312 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
13 Hb_000617_340 0.1663222164 - - respiratory burst oxidase B [Manihot esculenta]
14 Hb_000069_050 0.1673758681 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
15 Hb_098795_010 0.1686932367 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
16 Hb_001473_100 0.1696779328 - - chalcone synthase 1 [Jatropha curcas]
17 Hb_025469_040 0.1702002273 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
18 Hb_000245_140 0.1724371313 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
19 Hb_007747_030 0.173431652 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
20 Hb_007483_030 0.1775810981 - - -

Gene co-expression network

sample Hb_156144_040 Hb_156144_040 Hb_000038_090 Hb_000038_090 Hb_156144_040--Hb_000038_090 Hb_000631_130 Hb_000631_130 Hb_156144_040--Hb_000631_130 Hb_001168_010 Hb_001168_010 Hb_156144_040--Hb_001168_010 Hb_007044_070 Hb_007044_070 Hb_156144_040--Hb_007044_070 Hb_004445_090 Hb_004445_090 Hb_156144_040--Hb_004445_090 Hb_000933_200 Hb_000933_200 Hb_156144_040--Hb_000933_200 Hb_000038_090--Hb_000631_130 Hb_001473_100 Hb_001473_100 Hb_000038_090--Hb_001473_100 Hb_000038_090--Hb_000933_200 Hb_000327_300 Hb_000327_300 Hb_000038_090--Hb_000327_300 Hb_007747_030 Hb_007747_030 Hb_000038_090--Hb_007747_030 Hb_000407_110 Hb_000407_110 Hb_000038_090--Hb_000407_110 Hb_000631_130--Hb_001473_100 Hb_025469_040 Hb_025469_040 Hb_000631_130--Hb_025469_040 Hb_000631_130--Hb_007044_070 Hb_000631_130--Hb_000933_200 Hb_131864_020 Hb_131864_020 Hb_000631_130--Hb_131864_020 Hb_001168_010--Hb_000327_300 Hb_000245_140 Hb_000245_140 Hb_001168_010--Hb_000245_140 Hb_001168_010--Hb_000631_130 Hb_004586_080 Hb_004586_080 Hb_001168_010--Hb_004586_080 Hb_008080_040 Hb_008080_040 Hb_001168_010--Hb_008080_040 Hb_001168_010--Hb_000038_090 Hb_007044_070--Hb_025469_040 Hb_007044_070--Hb_131864_020 Hb_007044_070--Hb_001473_100 Hb_001936_030 Hb_001936_030 Hb_007044_070--Hb_001936_030 Hb_142522_030 Hb_142522_030 Hb_007044_070--Hb_142522_030 Hb_004445_090--Hb_000245_140 Hb_000563_610 Hb_000563_610 Hb_004445_090--Hb_000563_610 Hb_000204_030 Hb_000204_030 Hb_004445_090--Hb_000204_030 Hb_002232_370 Hb_002232_370 Hb_004445_090--Hb_002232_370 Hb_000739_130 Hb_000739_130 Hb_004445_090--Hb_000739_130 Hb_000438_190 Hb_000438_190 Hb_004445_090--Hb_000438_190 Hb_003253_020 Hb_003253_020 Hb_000933_200--Hb_003253_020 Hb_000617_340 Hb_000617_340 Hb_000933_200--Hb_000617_340 Hb_010407_120 Hb_010407_120 Hb_000933_200--Hb_010407_120 Hb_000513_110 Hb_000513_110 Hb_000933_200--Hb_000513_110 Hb_001544_040 Hb_001544_040 Hb_000933_200--Hb_001544_040 Hb_003786_060 Hb_003786_060 Hb_000933_200--Hb_003786_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.129875 0.514987 0.859742 0.270799 0.11843 0.012323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.7078 0

CAGE analysis