Hb_118977_010

Information

Type -
Description -
Location Contig118977: 2-2344
Sequence    

Annotation

kegg
ID rcu:RCOM_1321770
description hypothetical protein
nr
ID XP_002525704.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SI85
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1321770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118977_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004846_040 0.1418620763 transcription factor TF Family: HMG -
3 Hb_002184_150 0.1499781965 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_000198_070 0.1530550851 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
5 Hb_001266_140 0.1596117391 - - PREDICTED: protein RER1B [Jatropha curcas]
6 Hb_004994_320 0.1615846558 - - PREDICTED: putative ripening-related protein 1 [Cicer arietinum]
7 Hb_163950_030 0.16634835 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
8 Hb_000700_150 0.1674283588 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005085_020 0.1728901941 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
10 Hb_000390_130 0.1743304284 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]
11 Hb_000567_360 0.1743797959 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
12 Hb_002685_120 0.1774398245 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000140_490 0.1777561824 - - BnaC01g32630D [Brassica napus]
14 Hb_000976_260 0.1779433016 - - -
15 Hb_106411_010 0.1783503401 - - Ribosomal protein S25 family protein [Theobroma cacao]
16 Hb_000915_110 0.1802204354 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
17 Hb_000009_650 0.184327445 - - PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Jatropha curcas]
18 Hb_006694_020 0.1846053717 - - PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
19 Hb_002769_020 0.1855975075 - - DNA-damage-inducible protein f, putative [Ricinus communis]
20 Hb_000203_230 0.1857927366 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]

Gene co-expression network

sample Hb_118977_010 Hb_118977_010 Hb_004846_040 Hb_004846_040 Hb_118977_010--Hb_004846_040 Hb_002184_150 Hb_002184_150 Hb_118977_010--Hb_002184_150 Hb_000198_070 Hb_000198_070 Hb_118977_010--Hb_000198_070 Hb_001266_140 Hb_001266_140 Hb_118977_010--Hb_001266_140 Hb_004994_320 Hb_004994_320 Hb_118977_010--Hb_004994_320 Hb_163950_030 Hb_163950_030 Hb_118977_010--Hb_163950_030 Hb_000915_110 Hb_000915_110 Hb_004846_040--Hb_000915_110 Hb_000428_050 Hb_000428_050 Hb_004846_040--Hb_000428_050 Hb_004846_040--Hb_163950_030 Hb_001232_160 Hb_001232_160 Hb_004846_040--Hb_001232_160 Hb_000679_130 Hb_000679_130 Hb_004846_040--Hb_000679_130 Hb_000567_360 Hb_000567_360 Hb_004846_040--Hb_000567_360 Hb_000700_150 Hb_000700_150 Hb_002184_150--Hb_000700_150 Hb_069662_010 Hb_069662_010 Hb_002184_150--Hb_069662_010 Hb_002184_150--Hb_163950_030 Hb_001205_300 Hb_001205_300 Hb_002184_150--Hb_001205_300 Hb_003440_060 Hb_003440_060 Hb_002184_150--Hb_003440_060 Hb_008642_040 Hb_008642_040 Hb_002184_150--Hb_008642_040 Hb_000606_080 Hb_000606_080 Hb_000198_070--Hb_000606_080 Hb_012132_040 Hb_012132_040 Hb_000198_070--Hb_012132_040 Hb_013691_020 Hb_013691_020 Hb_000198_070--Hb_013691_020 Hb_002067_020 Hb_002067_020 Hb_000198_070--Hb_002067_020 Hb_000364_080 Hb_000364_080 Hb_000198_070--Hb_000364_080 Hb_000523_090 Hb_000523_090 Hb_000198_070--Hb_000523_090 Hb_030827_030 Hb_030827_030 Hb_001266_140--Hb_030827_030 Hb_008556_030 Hb_008556_030 Hb_001266_140--Hb_008556_030 Hb_001266_140--Hb_000567_360 Hb_000797_050 Hb_000797_050 Hb_001266_140--Hb_000797_050 Hb_002681_170 Hb_002681_170 Hb_001266_140--Hb_002681_170 Hb_022693_030 Hb_022693_030 Hb_001266_140--Hb_022693_030 Hb_004668_110 Hb_004668_110 Hb_004994_320--Hb_004668_110 Hb_001373_110 Hb_001373_110 Hb_004994_320--Hb_001373_110 Hb_007101_160 Hb_007101_160 Hb_004994_320--Hb_007101_160 Hb_001377_030 Hb_001377_030 Hb_004994_320--Hb_001377_030 Hb_002450_040 Hb_002450_040 Hb_004994_320--Hb_002450_040 Hb_004837_030 Hb_004837_030 Hb_163950_030--Hb_004837_030 Hb_009694_010 Hb_009694_010 Hb_163950_030--Hb_009694_010 Hb_004841_010 Hb_004841_010 Hb_163950_030--Hb_004841_010 Hb_000494_040 Hb_000494_040 Hb_163950_030--Hb_000494_040 Hb_000606_090 Hb_000606_090 Hb_163950_030--Hb_000606_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.57782 0.0912633 0.594548 0.367739 0.629598 1.03389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.278399 0.547434 0.134953 0.0293049 0.450157

CAGE analysis