Hb_001232_160

Information

Type -
Description -
Location Contig1232: 110416-112852
Sequence    

Annotation

kegg
ID tcc:TCM_028683
description Structural molecules
nr
ID XP_012453757.1
description PREDICTED: protein SYS1 homolog [Gossypium raimondii]
swissprot
ID Q55E69
description Protein SYS1 homolog OS=Dictyostelium discoideum GN=sys1 PE=3 SV=1
trembl
ID A0A0D2T4C4
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G077000 PE=4 SV=1
Gene Ontology
ID GO:0000139
description protein sys1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07067: 109876-110146 , PASA_asmbl_07068: 110373-112824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001232_160 0.0 - - PREDICTED: protein SYS1 homolog [Gossypium raimondii]
2 Hb_000365_390 0.1081623193 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
3 Hb_000428_050 0.108645093 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X2 [Jatropha curcas]
4 Hb_007904_200 0.1094940992 - - protein binding protein, putative [Ricinus communis]
5 Hb_003195_070 0.1106282877 - - Uncharacterized protein isoform 1 [Theobroma cacao]
6 Hb_004447_060 0.1111894163 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
7 Hb_010457_030 0.1120521339 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
8 Hb_000125_130 0.1176804995 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
9 Hb_001047_030 0.1213430319 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
10 Hb_048937_040 0.1230296854 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
11 Hb_000173_230 0.1235559751 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
12 Hb_001675_180 0.1239851476 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
13 Hb_009048_040 0.1251120776 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
14 Hb_004846_040 0.1253193446 transcription factor TF Family: HMG -
15 Hb_000230_120 0.1268410352 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
16 Hb_000010_330 0.1282336068 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
17 Hb_011139_030 0.1286153542 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
18 Hb_006332_010 0.1287224502 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
19 Hb_003195_060 0.1306625521 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
20 Hb_010139_040 0.1310214011 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001232_160 Hb_001232_160 Hb_000365_390 Hb_000365_390 Hb_001232_160--Hb_000365_390 Hb_000428_050 Hb_000428_050 Hb_001232_160--Hb_000428_050 Hb_007904_200 Hb_007904_200 Hb_001232_160--Hb_007904_200 Hb_003195_070 Hb_003195_070 Hb_001232_160--Hb_003195_070 Hb_004447_060 Hb_004447_060 Hb_001232_160--Hb_004447_060 Hb_010457_030 Hb_010457_030 Hb_001232_160--Hb_010457_030 Hb_000365_390--Hb_010457_030 Hb_000010_330 Hb_000010_330 Hb_000365_390--Hb_000010_330 Hb_000125_130 Hb_000125_130 Hb_000365_390--Hb_000125_130 Hb_000365_390--Hb_007904_200 Hb_001638_170 Hb_001638_170 Hb_000365_390--Hb_001638_170 Hb_148644_010 Hb_148644_010 Hb_000365_390--Hb_148644_010 Hb_001776_140 Hb_001776_140 Hb_000428_050--Hb_001776_140 Hb_012022_160 Hb_012022_160 Hb_000428_050--Hb_012022_160 Hb_000428_050--Hb_000010_330 Hb_000428_050--Hb_007904_200 Hb_000428_050--Hb_003195_070 Hb_001675_180 Hb_001675_180 Hb_000428_050--Hb_001675_180 Hb_007904_200--Hb_000010_330 Hb_007904_200--Hb_010457_030 Hb_000451_010 Hb_000451_010 Hb_007904_200--Hb_000451_010 Hb_007904_200--Hb_000125_130 Hb_007904_200--Hb_003195_070 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_002506_020 Hb_002506_020 Hb_003195_070--Hb_002506_020 Hb_003195_070--Hb_000010_330 Hb_048937_040 Hb_048937_040 Hb_003195_070--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_003195_070--Hb_004109_090 Hb_002200_080 Hb_002200_080 Hb_003195_070--Hb_002200_080 Hb_001301_200 Hb_001301_200 Hb_004447_060--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_004447_060--Hb_001797_050 Hb_004619_050 Hb_004619_050 Hb_004447_060--Hb_004619_050 Hb_004447_060--Hb_048937_040 Hb_007163_090 Hb_007163_090 Hb_004447_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004447_060--Hb_000820_170 Hb_010457_030--Hb_000010_330 Hb_010457_030--Hb_048937_040 Hb_019280_040 Hb_019280_040 Hb_010457_030--Hb_019280_040 Hb_003175_010 Hb_003175_010 Hb_010457_030--Hb_003175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1035 14.9976 11.5149 22.91 23.1133 53.0486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8437 24.5373 36.693 6.89605 14.6832

CAGE analysis