Hb_096490_010

Information

Type -
Description -
Location Contig96490: 964-1149
Sequence    

Annotation

kegg
ID cic:CICLE_v100210772m
description hypothetical protein
nr
ID XP_006445410.1
description hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID M1CGJ2
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402026045 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63873: 1417-2026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096490_010 0.0 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
2 Hb_034579_010 0.202125514 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
3 Hb_000002_030 0.2074870288 - - -
4 Hb_005933_010 0.2185344295 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
5 Hb_001385_080 0.2231859858 - - -
6 Hb_001454_110 0.2248829585 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
7 Hb_002365_010 0.2331936655 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
8 Hb_145827_010 0.2339903638 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
9 Hb_059952_010 0.2377665047 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
10 Hb_001907_090 0.2382713298 - - -
11 Hb_000805_300 0.2413600628 - - -
12 Hb_032531_040 0.2432871435 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
13 Hb_001691_160 0.2459067617 - - conserved hypothetical protein [Ricinus communis]
14 Hb_075642_010 0.2466577801 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
15 Hb_032531_050 0.2495708162 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
16 Hb_000204_020 0.2518551939 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
17 Hb_000316_090 0.2573490414 - - -
18 Hb_032531_060 0.2577758199 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
19 Hb_122567_020 0.2631430661 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
20 Hb_001579_040 0.2667718814 - - -

Gene co-expression network

sample Hb_096490_010 Hb_096490_010 Hb_034579_010 Hb_034579_010 Hb_096490_010--Hb_034579_010 Hb_000002_030 Hb_000002_030 Hb_096490_010--Hb_000002_030 Hb_005933_010 Hb_005933_010 Hb_096490_010--Hb_005933_010 Hb_001385_080 Hb_001385_080 Hb_096490_010--Hb_001385_080 Hb_001454_110 Hb_001454_110 Hb_096490_010--Hb_001454_110 Hb_002365_010 Hb_002365_010 Hb_096490_010--Hb_002365_010 Hb_032531_060 Hb_032531_060 Hb_034579_010--Hb_032531_060 Hb_005731_140 Hb_005731_140 Hb_034579_010--Hb_005731_140 Hb_124141_010 Hb_124141_010 Hb_034579_010--Hb_124141_010 Hb_034579_010--Hb_000002_030 Hb_034579_010--Hb_005933_010 Hb_168737_010 Hb_168737_010 Hb_034579_010--Hb_168737_010 Hb_032531_050 Hb_032531_050 Hb_000002_030--Hb_032531_050 Hb_000316_090 Hb_000316_090 Hb_000002_030--Hb_000316_090 Hb_000002_030--Hb_002365_010 Hb_101151_030 Hb_101151_030 Hb_000002_030--Hb_101151_030 Hb_001235_060 Hb_001235_060 Hb_000002_030--Hb_001235_060 Hb_122567_020 Hb_122567_020 Hb_005933_010--Hb_122567_020 Hb_000248_030 Hb_000248_030 Hb_005933_010--Hb_000248_030 Hb_005933_010--Hb_001235_060 Hb_000248_010 Hb_000248_010 Hb_005933_010--Hb_000248_010 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_059952_010 Hb_059952_010 Hb_005933_010--Hb_059952_010 Hb_001385_080--Hb_122567_020 Hb_001385_080--Hb_005933_010 Hb_001385_080--Hb_059952_010 Hb_000805_300 Hb_000805_300 Hb_001385_080--Hb_000805_300 Hb_001385_080--Hb_001454_110 Hb_001385_080--Hb_101151_030 Hb_032531_040 Hb_032531_040 Hb_001454_110--Hb_032531_040 Hb_001454_110--Hb_000805_300 Hb_001454_110--Hb_032531_050 Hb_001454_110--Hb_059952_010 Hb_001579_040 Hb_001579_040 Hb_001454_110--Hb_001579_040 Hb_001454_110--Hb_101151_030 Hb_000003_690 Hb_000003_690 Hb_002365_010--Hb_000003_690 Hb_005222_010 Hb_005222_010 Hb_002365_010--Hb_005222_010 Hb_002365_010--Hb_000316_090 Hb_002365_010--Hb_034579_010 Hb_075642_010 Hb_075642_010 Hb_002365_010--Hb_075642_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.64527 2.81377 18.4558 16.0879 10.1834 378.689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4813 56.6271 1.79832 5.39317 1.78518

CAGE analysis