Hb_093084_020

Information

Type -
Description -
Location Contig93084: 13719-17318
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09350g
description POPTRDRAFT_1101409; hypothetical protein
nr
ID XP_011046250.1
description PREDICTED: lysM domain receptor-like kinase 3 [Populus euphratica]
swissprot
ID F4IB81
description LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1
trembl
ID B9IEW7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09350g PE=3 SV=1
Gene Ontology
ID GO:0004674
description lysm domain receptor-like kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62840: 14046-14758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093084_020 0.0 - - PREDICTED: lysM domain receptor-like kinase 3 [Populus euphratica]
2 Hb_000638_180 0.1846225568 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
3 Hb_003209_090 0.2011873142 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
4 Hb_004241_200 0.2035980826 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
5 Hb_000003_700 0.2040764868 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
6 Hb_009557_050 0.2093210898 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
7 Hb_003159_150 0.2101368283 - - PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Jatropha curcas]
8 Hb_007292_050 0.2128125784 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
9 Hb_004450_030 0.2142074385 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003209_040 0.2160647063 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
11 Hb_005183_080 0.2165056603 - - -
12 Hb_081864_010 0.219468765 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_005048_090 0.2211900864 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
14 Hb_138743_010 0.2219401716 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
15 Hb_005618_010 0.2222761696 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
16 Hb_000983_110 0.2226448998 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
17 Hb_001295_050 0.2233383627 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
18 Hb_002170_010 0.2234710243 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
19 Hb_010267_030 0.223557558 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
20 Hb_000692_230 0.2246872346 - - phospholipase d delta, putative [Ricinus communis]

Gene co-expression network

sample Hb_093084_020 Hb_093084_020 Hb_000638_180 Hb_000638_180 Hb_093084_020--Hb_000638_180 Hb_003209_090 Hb_003209_090 Hb_093084_020--Hb_003209_090 Hb_004241_200 Hb_004241_200 Hb_093084_020--Hb_004241_200 Hb_000003_700 Hb_000003_700 Hb_093084_020--Hb_000003_700 Hb_009557_050 Hb_009557_050 Hb_093084_020--Hb_009557_050 Hb_003159_150 Hb_003159_150 Hb_093084_020--Hb_003159_150 Hb_000732_100 Hb_000732_100 Hb_000638_180--Hb_000732_100 Hb_114733_010 Hb_114733_010 Hb_000638_180--Hb_114733_010 Hb_007292_050 Hb_007292_050 Hb_000638_180--Hb_007292_050 Hb_000638_180--Hb_004241_200 Hb_097634_010 Hb_097634_010 Hb_000638_180--Hb_097634_010 Hb_000742_260 Hb_000742_260 Hb_000638_180--Hb_000742_260 Hb_000371_120 Hb_000371_120 Hb_003209_090--Hb_000371_120 Hb_182970_010 Hb_182970_010 Hb_003209_090--Hb_182970_010 Hb_003209_090--Hb_097634_010 Hb_002400_040 Hb_002400_040 Hb_003209_090--Hb_002400_040 Hb_003209_090--Hb_004241_200 Hb_000077_160 Hb_000077_160 Hb_003209_090--Hb_000077_160 Hb_008406_030 Hb_008406_030 Hb_004241_200--Hb_008406_030 Hb_003209_040 Hb_003209_040 Hb_004241_200--Hb_003209_040 Hb_001195_650 Hb_001195_650 Hb_004241_200--Hb_001195_650 Hb_000983_110 Hb_000983_110 Hb_004241_200--Hb_000983_110 Hb_002066_010 Hb_002066_010 Hb_000003_700--Hb_002066_010 Hb_001699_030 Hb_001699_030 Hb_000003_700--Hb_001699_030 Hb_020301_010 Hb_020301_010 Hb_000003_700--Hb_020301_010 Hb_000172_070 Hb_000172_070 Hb_000003_700--Hb_000172_070 Hb_005588_130 Hb_005588_130 Hb_000003_700--Hb_005588_130 Hb_002973_030 Hb_002973_030 Hb_000003_700--Hb_002973_030 Hb_009557_050--Hb_008406_030 Hb_009557_050--Hb_004241_200 Hb_000003_760 Hb_000003_760 Hb_009557_050--Hb_000003_760 Hb_001472_140 Hb_001472_140 Hb_009557_050--Hb_001472_140 Hb_002234_130 Hb_002234_130 Hb_009557_050--Hb_002234_130 Hb_019026_030 Hb_019026_030 Hb_009557_050--Hb_019026_030 Hb_001123_250 Hb_001123_250 Hb_003159_150--Hb_001123_250 Hb_002893_030 Hb_002893_030 Hb_003159_150--Hb_002893_030 Hb_000365_280 Hb_000365_280 Hb_003159_150--Hb_000365_280 Hb_004007_070 Hb_004007_070 Hb_003159_150--Hb_004007_070 Hb_003159_150--Hb_000371_120 Hb_000086_090 Hb_000086_090 Hb_003159_150--Hb_000086_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.297305 0.0664937 0.401213 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0495626 0 0.0368865 0.00776371 0.123298

CAGE analysis