Hb_032808_020

Information

Type -
Description -
Location Contig32808: 19768-21405
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11410g
description POPTRDRAFT_577584; band 7 family protein
nr
ID XP_009596453.1
description PREDICTED: hypersensitive-induced response protein 2 [Nicotiana tomentosiformis]
swissprot
ID Q9FM19
description Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1
trembl
ID A9PK28
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0005774
description hypersensitive-induced response protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34456: 19530-21415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032808_020 0.0 - - PREDICTED: hypersensitive-induced response protein 2 [Nicotiana tomentosiformis]
2 Hb_002141_030 0.09655614 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000787_050 0.0984697824 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
4 Hb_000059_330 0.0992771903 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
5 Hb_001662_070 0.1073732347 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
6 Hb_000251_070 0.1074072426 - - hypothetical protein L484_010641 [Morus notabilis]
7 Hb_004934_110 0.1086602767 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
8 Hb_000141_040 0.1091627859 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
9 Hb_032208_070 0.1091947242 - - PREDICTED: probable polyamine transporter At3g13620 isoform X2 [Jatropha curcas]
10 Hb_002685_040 0.1095348237 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
11 Hb_005147_100 0.1095750702 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001259_090 0.1107166814 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
13 Hb_010222_020 0.1115130944 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
14 Hb_025645_010 0.1121475935 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
15 Hb_000127_130 0.1126345933 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
16 Hb_000230_200 0.1138351805 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
17 Hb_000347_540 0.1145856875 - - protein binding protein, putative [Ricinus communis]
18 Hb_002256_030 0.1147890785 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003749_010 0.1147987817 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000866_270 0.1154205641 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]

Gene co-expression network

sample Hb_032808_020 Hb_032808_020 Hb_002141_030 Hb_002141_030 Hb_032808_020--Hb_002141_030 Hb_000787_050 Hb_000787_050 Hb_032808_020--Hb_000787_050 Hb_000059_330 Hb_000059_330 Hb_032808_020--Hb_000059_330 Hb_001662_070 Hb_001662_070 Hb_032808_020--Hb_001662_070 Hb_000251_070 Hb_000251_070 Hb_032808_020--Hb_000251_070 Hb_004934_110 Hb_004934_110 Hb_032808_020--Hb_004934_110 Hb_000521_080 Hb_000521_080 Hb_002141_030--Hb_000521_080 Hb_000365_120 Hb_000365_120 Hb_002141_030--Hb_000365_120 Hb_002490_020 Hb_002490_020 Hb_002141_030--Hb_002490_020 Hb_000403_050 Hb_000403_050 Hb_002141_030--Hb_000403_050 Hb_002107_030 Hb_002107_030 Hb_002141_030--Hb_002107_030 Hb_002141_030--Hb_000059_330 Hb_000787_050--Hb_001662_070 Hb_002835_240 Hb_002835_240 Hb_000787_050--Hb_002835_240 Hb_025645_010 Hb_025645_010 Hb_000787_050--Hb_025645_010 Hb_000331_080 Hb_000331_080 Hb_000787_050--Hb_000331_080 Hb_118419_010 Hb_118419_010 Hb_000787_050--Hb_118419_010 Hb_004195_270 Hb_004195_270 Hb_000787_050--Hb_004195_270 Hb_096563_010 Hb_096563_010 Hb_000059_330--Hb_096563_010 Hb_001259_090 Hb_001259_090 Hb_000059_330--Hb_001259_090 Hb_003428_030 Hb_003428_030 Hb_000059_330--Hb_003428_030 Hb_003092_040 Hb_003092_040 Hb_000059_330--Hb_003092_040 Hb_024071_020 Hb_024071_020 Hb_000059_330--Hb_024071_020 Hb_004310_130 Hb_004310_130 Hb_000059_330--Hb_004310_130 Hb_001662_070--Hb_025645_010 Hb_000815_320 Hb_000815_320 Hb_001662_070--Hb_000815_320 Hb_165132_010 Hb_165132_010 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_005186_050 Hb_005186_050 Hb_000251_070--Hb_005186_050 Hb_000251_070--Hb_004934_110 Hb_000251_070--Hb_001662_070 Hb_145880_030 Hb_145880_030 Hb_000251_070--Hb_145880_030 Hb_003607_150 Hb_003607_150 Hb_000251_070--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_000251_070--Hb_007154_020 Hb_004931_090 Hb_004931_090 Hb_004934_110--Hb_004931_090 Hb_004657_050 Hb_004657_050 Hb_004934_110--Hb_004657_050 Hb_004934_110--Hb_000331_080 Hb_003607_050 Hb_003607_050 Hb_004934_110--Hb_003607_050 Hb_000840_030 Hb_000840_030 Hb_004934_110--Hb_000840_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9943 0.654152 0.634503 0.993729 1.04321 0.81372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55713 1.63287 0.975546 0.476299 0.83395

CAGE analysis