Hb_024479_010

Information

Type -
Description -
Location Contig24479: 22-885
Sequence    

Annotation

kegg
ID tcc:TCM_027681
description Beta-Amyrin Synthase
nr
ID BAE43642.1
description beta-amyrin synthase [Euphorbia tirucalli]
swissprot
ID A8CDT2
description Beta-amyrin synthase OS=Bruguiera gymnorhiza GN=BAS PE=1 SV=1
trembl
ID Q401R6
description Terpene cyclase/mutase family member OS=Euphorbia tirucalli GN=EtAS PE=2 SV=1
Gene Ontology
ID GO:0003824
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024479_010 0.0 - - beta-amyrin synthase [Euphorbia tirucalli]
2 Hb_000010_040 0.2576108338 - - PREDICTED: probable 1-aminocyclopropane-1-carboxylate deaminase-like isoform X2 [Citrus sinensis]
3 Hb_003642_020 0.2616965619 - - chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]
4 Hb_001141_250 0.2818751512 - - hypothetical protein glysoja_047929, partial [Glycine soja]
5 Hb_008206_090 0.2822630548 - - PREDICTED: uncharacterized protein LOC100811033 [Glycine max]
6 Hb_094938_010 0.2833207755 - - -
7 Hb_001059_140 0.2877631753 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
8 Hb_001711_080 0.2897419622 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
9 Hb_025645_020 0.2924366165 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
10 Hb_001214_040 0.2924708467 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
11 Hb_000092_050 0.2925016782 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
12 Hb_004627_010 0.2936182255 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000140_300 0.306615784 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006422_030 0.3070102599 - - -
15 Hb_150486_010 0.3077982883 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
16 Hb_005271_230 0.3081204835 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
17 Hb_033683_020 0.3089079139 - - hypothetical protein POPTR_1072s00200g [Populus trichocarpa]
18 Hb_000130_350 0.3144515709 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
19 Hb_000176_080 0.3170634157 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
20 Hb_003397_020 0.3188195061 - - -

Gene co-expression network

sample Hb_024479_010 Hb_024479_010 Hb_000010_040 Hb_000010_040 Hb_024479_010--Hb_000010_040 Hb_003642_020 Hb_003642_020 Hb_024479_010--Hb_003642_020 Hb_001141_250 Hb_001141_250 Hb_024479_010--Hb_001141_250 Hb_008206_090 Hb_008206_090 Hb_024479_010--Hb_008206_090 Hb_094938_010 Hb_094938_010 Hb_024479_010--Hb_094938_010 Hb_001059_140 Hb_001059_140 Hb_024479_010--Hb_001059_140 Hb_000092_050 Hb_000092_050 Hb_000010_040--Hb_000092_050 Hb_000270_540 Hb_000270_540 Hb_000010_040--Hb_000270_540 Hb_005368_030 Hb_005368_030 Hb_000010_040--Hb_005368_030 Hb_005263_010 Hb_005263_010 Hb_000010_040--Hb_005263_010 Hb_182507_010 Hb_182507_010 Hb_000010_040--Hb_182507_010 Hb_001660_140 Hb_001660_140 Hb_000010_040--Hb_001660_140 Hb_002079_040 Hb_002079_040 Hb_003642_020--Hb_002079_040 Hb_003642_020--Hb_008206_090 Hb_048702_010 Hb_048702_010 Hb_003642_020--Hb_048702_010 Hb_002611_030 Hb_002611_030 Hb_003642_020--Hb_002611_030 Hb_094437_040 Hb_094437_040 Hb_003642_020--Hb_094437_040 Hb_003642_020--Hb_001059_140 Hb_001214_040 Hb_001214_040 Hb_001141_250--Hb_001214_040 Hb_008762_010 Hb_008762_010 Hb_001141_250--Hb_008762_010 Hb_000094_170 Hb_000094_170 Hb_001141_250--Hb_000094_170 Hb_000130_350 Hb_000130_350 Hb_001141_250--Hb_000130_350 Hb_000417_220 Hb_000417_220 Hb_001141_250--Hb_000417_220 Hb_000428_040 Hb_000428_040 Hb_001141_250--Hb_000428_040 Hb_033683_020 Hb_033683_020 Hb_008206_090--Hb_033683_020 Hb_005271_230 Hb_005271_230 Hb_008206_090--Hb_005271_230 Hb_003397_020 Hb_003397_020 Hb_008206_090--Hb_003397_020 Hb_006910_050 Hb_006910_050 Hb_008206_090--Hb_006910_050 Hb_000049_130 Hb_000049_130 Hb_008206_090--Hb_000049_130 Hb_012787_020 Hb_012787_020 Hb_094938_010--Hb_012787_020 Hb_000339_060 Hb_000339_060 Hb_094938_010--Hb_000339_060 Hb_002085_060 Hb_002085_060 Hb_094938_010--Hb_002085_060 Hb_003638_020 Hb_003638_020 Hb_094938_010--Hb_003638_020 Hb_070771_010 Hb_070771_010 Hb_094938_010--Hb_070771_010 Hb_001935_200 Hb_001935_200 Hb_094938_010--Hb_001935_200 Hb_047691_010 Hb_047691_010 Hb_001059_140--Hb_047691_010 Hb_001059_140--Hb_048702_010 Hb_017014_020 Hb_017014_020 Hb_001059_140--Hb_017014_020 Hb_121694_010 Hb_121694_010 Hb_001059_140--Hb_121694_010 Hb_099990_020 Hb_099990_020 Hb_001059_140--Hb_099990_020 Hb_184541_010 Hb_184541_010 Hb_001059_140--Hb_184541_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45082 1.91487 0.276996 64.9898 0.966519 25.8212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.209323 0.318446 0.837933 35.5072

CAGE analysis