Hb_019516_050

Information

Type -
Description -
Location Contig19516: 34859-36543
Sequence    

Annotation

kegg
ID tcc:TCM_029483
description Gibberellin 2-beta-dioxygenase isoform 1
nr
ID KDP37976.1
description hypothetical protein JCGZ_04619 [Jatropha curcas]
swissprot
ID Q9XG83
description Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1
trembl
ID A0A067KP16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04619 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 2-beta-dioxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019516_050 0.0 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
2 Hb_017434_020 0.1397887785 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
3 Hb_004143_050 0.1461324418 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
4 Hb_000252_190 0.148583091 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
5 Hb_002236_020 0.1506536667 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
6 Hb_004122_020 0.1535583221 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
7 Hb_011101_010 0.1621044048 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
8 Hb_024857_010 0.1641134169 - - glutaredoxin 2.1 [Hevea brasiliensis]
9 Hb_002267_030 0.1682837809 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
10 Hb_000656_370 0.1691855569 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_125884_010 0.1715998799 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
12 Hb_000245_270 0.1739942196 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
13 Hb_005714_140 0.1743607818 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_003800_010 0.1753108248 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
15 Hb_029238_020 0.1760672424 - - PREDICTED: expansin-like A1 [Jatropha curcas]
16 Hb_002239_030 0.1761616116 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
17 Hb_000087_180 0.1781666339 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000260_130 0.1788093141 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
19 Hb_087468_010 0.1788954858 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
20 Hb_052113_020 0.1789996043 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]

Gene co-expression network

sample Hb_019516_050 Hb_019516_050 Hb_017434_020 Hb_017434_020 Hb_019516_050--Hb_017434_020 Hb_004143_050 Hb_004143_050 Hb_019516_050--Hb_004143_050 Hb_000252_190 Hb_000252_190 Hb_019516_050--Hb_000252_190 Hb_002236_020 Hb_002236_020 Hb_019516_050--Hb_002236_020 Hb_004122_020 Hb_004122_020 Hb_019516_050--Hb_004122_020 Hb_011101_010 Hb_011101_010 Hb_019516_050--Hb_011101_010 Hb_000087_180 Hb_000087_180 Hb_017434_020--Hb_000087_180 Hb_183539_010 Hb_183539_010 Hb_017434_020--Hb_183539_010 Hb_000506_130 Hb_000506_130 Hb_017434_020--Hb_000506_130 Hb_000506_140 Hb_000506_140 Hb_017434_020--Hb_000506_140 Hb_005183_010 Hb_005183_010 Hb_017434_020--Hb_005183_010 Hb_004607_180 Hb_004607_180 Hb_017434_020--Hb_004607_180 Hb_000742_260 Hb_000742_260 Hb_004143_050--Hb_000742_260 Hb_000245_270 Hb_000245_270 Hb_004143_050--Hb_000245_270 Hb_019026_030 Hb_019026_030 Hb_004143_050--Hb_019026_030 Hb_003800_010 Hb_003800_010 Hb_004143_050--Hb_003800_010 Hb_004143_050--Hb_000506_130 Hb_029238_020 Hb_029238_020 Hb_004143_050--Hb_029238_020 Hb_000252_190--Hb_002236_020 Hb_024857_010 Hb_024857_010 Hb_000252_190--Hb_024857_010 Hb_087468_010 Hb_087468_010 Hb_000252_190--Hb_087468_010 Hb_005714_140 Hb_005714_140 Hb_000252_190--Hb_005714_140 Hb_000252_190--Hb_003800_010 Hb_000656_370 Hb_000656_370 Hb_000252_190--Hb_000656_370 Hb_002236_020--Hb_024857_010 Hb_002236_020--Hb_000656_370 Hb_007305_040 Hb_007305_040 Hb_002236_020--Hb_007305_040 Hb_002236_020--Hb_004122_020 Hb_002968_010 Hb_002968_010 Hb_002236_020--Hb_002968_010 Hb_004122_020--Hb_002968_010 Hb_004122_020--Hb_000656_370 Hb_006052_040 Hb_006052_040 Hb_004122_020--Hb_006052_040 Hb_006198_060 Hb_006198_060 Hb_004122_020--Hb_006198_060 Hb_002475_010 Hb_002475_010 Hb_004122_020--Hb_002475_010 Hb_000000_070 Hb_000000_070 Hb_004122_020--Hb_000000_070 Hb_000365_190 Hb_000365_190 Hb_011101_010--Hb_000365_190 Hb_123078_010 Hb_123078_010 Hb_011101_010--Hb_123078_010 Hb_004218_290 Hb_004218_290 Hb_011101_010--Hb_004218_290 Hb_001587_220 Hb_001587_220 Hb_011101_010--Hb_001587_220 Hb_002267_030 Hb_002267_030 Hb_011101_010--Hb_002267_030 Hb_011101_010--Hb_000252_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.055025 1.19039 0.111122 0.521483 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0329645 0 0.105696 0.136234

CAGE analysis