Hb_018869_020

Information

Type -
Description -
Location Contig18869: 388-1338
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08730g
description POPTRDRAFT_751384; hypothetical protein
nr
ID XP_002299564.2
description hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GKP2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08730g PE=4 SV=2
Gene Ontology
ID GO:0043167
description hypothetical protein POPTR_0001s08730g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018869_020 0.0 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
2 Hb_003124_140 0.2554872148 - - hypothetical protein Csa_4G182240 [Cucumis sativus]
3 Hb_000434_020 0.2779853154 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
4 Hb_003938_070 0.2830260397 - - ring finger protein, putative [Ricinus communis]
5 Hb_002526_020 0.2846059003 - - -
6 Hb_002759_110 0.292735808 - - RNA-binding family protein, putative isoform 1 [Theobroma cacao]
7 Hb_000500_210 0.3013005277 - - -
8 Hb_006588_010 0.3015699997 - - -
9 Hb_107221_010 0.3064636112 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_003376_380 0.3120894268 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
11 Hb_000003_360 0.316960257 - - Putative inactive purple acid phosphatase 27 [Glycine soja]
12 Hb_000284_190 0.3169815997 - - lactoylglutathione lyase, putative [Ricinus communis]
13 Hb_001140_240 0.3179261138 - - metal ion binding protein, putative [Ricinus communis]
14 Hb_000402_100 0.3227976603 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
15 Hb_000258_450 0.3310606042 - - -
16 Hb_011224_040 0.3354292625 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
17 Hb_170207_010 0.3387227998 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
18 Hb_148909_020 0.3409584109 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_000239_110 0.3417483756 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
20 Hb_139138_010 0.3449789704 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]

Gene co-expression network

sample Hb_018869_020 Hb_018869_020 Hb_003124_140 Hb_003124_140 Hb_018869_020--Hb_003124_140 Hb_000434_020 Hb_000434_020 Hb_018869_020--Hb_000434_020 Hb_003938_070 Hb_003938_070 Hb_018869_020--Hb_003938_070 Hb_002526_020 Hb_002526_020 Hb_018869_020--Hb_002526_020 Hb_002759_110 Hb_002759_110 Hb_018869_020--Hb_002759_110 Hb_000500_210 Hb_000500_210 Hb_018869_020--Hb_000500_210 Hb_003124_140--Hb_002526_020 Hb_003124_140--Hb_000434_020 Hb_012163_030 Hb_012163_030 Hb_003124_140--Hb_012163_030 Hb_000804_030 Hb_000804_030 Hb_003124_140--Hb_000804_030 Hb_008954_010 Hb_008954_010 Hb_003124_140--Hb_008954_010 Hb_011224_040 Hb_011224_040 Hb_000434_020--Hb_011224_040 Hb_000434_020--Hb_000500_210 Hb_000434_020--Hb_002526_020 Hb_065866_010 Hb_065866_010 Hb_000434_020--Hb_065866_010 Hb_000434_020--Hb_002759_110 Hb_187024_070 Hb_187024_070 Hb_000434_020--Hb_187024_070 Hb_003813_160 Hb_003813_160 Hb_003938_070--Hb_003813_160 Hb_003638_070 Hb_003638_070 Hb_003938_070--Hb_003638_070 Hb_000753_190 Hb_000753_190 Hb_003938_070--Hb_000753_190 Hb_000003_360 Hb_000003_360 Hb_003938_070--Hb_000003_360 Hb_001204_020 Hb_001204_020 Hb_003938_070--Hb_001204_020 Hb_003784_050 Hb_003784_050 Hb_002526_020--Hb_003784_050 Hb_002526_020--Hb_011224_040 Hb_100180_010 Hb_100180_010 Hb_002526_020--Hb_100180_010 Hb_003376_380 Hb_003376_380 Hb_002526_020--Hb_003376_380 Hb_002526_020--Hb_000500_210 Hb_000270_610 Hb_000270_610 Hb_002759_110--Hb_000270_610 Hb_001823_060 Hb_001823_060 Hb_002759_110--Hb_001823_060 Hb_000175_190 Hb_000175_190 Hb_002759_110--Hb_000175_190 Hb_005144_070 Hb_005144_070 Hb_002759_110--Hb_005144_070 Hb_000577_090 Hb_000577_090 Hb_002759_110--Hb_000577_090 Hb_000111_100 Hb_000111_100 Hb_002759_110--Hb_000111_100 Hb_000500_210--Hb_011224_040 Hb_004429_110 Hb_004429_110 Hb_000500_210--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_004755_030 Hb_004755_030 Hb_000500_210--Hb_004755_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0718021 0.0479014 0.0227902 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.197225 0.516939 0 0.0418192 0.103972

CAGE analysis